Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq156841 114 1e-20 seq119769 114 1e-20 >seq156841 Length=49269 Score = 114 bits (126), Expect = 1e-20 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 |||||| ||||||||||| ||||||||||| ||||| ||||| || || || || || Sbjct 12900 CAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGT 12959 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAA 21590 ||| || |||||||| || | |||||||||||| ||||| | | || | || ||| || | Sbjct 12960 TAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGA 13018 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 | ||||| || || || |||||| ||||| || || || Sbjct 13019 AAAAAATACCTTCCACACAAGCAAAGGCAACCAAACGCTC 13058 >seq119769 Length=87979 Score = 114 bits (126), Expect = 1e-20 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 |||||| ||||||||||| ||||||||||| ||||| || || || || || || || Sbjct 78880 CAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGT 78821 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAA 21590 ||| || |||||||| || | |||||||||||| ||||| | | || | ||| || || | Sbjct 78820 TAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGA 78762 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 | ||||| || || || |||||||||||| || || || Sbjct 78761 AAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTC 78722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530782166076280