Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq119769 179 5e-40 seq156841 172 7e-38 >seq119769 Length=87979 Score = 179 bits (198), Expect = 5e-40 Identities = 569/875 (65%), Gaps = 14/875 (2%) Strand=Plus/Minus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| || || || || || | || || || |||||||| || |||| || || Sbjct 79168 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 79109 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 ||||| ||||||||||||| | |||| || | || | | | ||||| || | Sbjct 79108 CTCCATCCAATCAAACGGATTCTGAGCATTGTATAACTTATCATAACCCAAAGCATCCAA 79049 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 ||||||||| || |||||||| || ||| | |||||| || | ||||||||| | || Sbjct 79048 CAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG 78989 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 | || || || || | ||| || ||| || || ||||||| | ||| Sbjct 78988 CGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 78929 Query 33252 AGATCTAACGGTTTCTTCACTCGG-TGGATGC--AATAAATGTTTAAACATCAAACATGC 33308 |||| ||| ||| | | | | | || ||| || | | |||||| || Sbjct 78928 TCCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGC 78872 Query 33309 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 33368 ||||| ||||||| ||| ||||| || ||| | ||||| || || || | ||| || Sbjct 78871 AAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCAGG 78812 Query 33369 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCC 33428 ||||| || |||||||| | ||| ||||| | | ||| |||||| || || || || Sbjct 78811 CATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACC 78752 Query 33429 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTATCCA 33485 ||| || |||||| |||| | | ||| || | ||| | ||| ||||| Sbjct 78751 TTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCA 78695 Query 33486 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 | | ||||| | |||||||| | ||||| || || || || | || || | Sbjct 78694 ACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAA 78635 Query 33546 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 33605 | ||||||| | | || || | |||| || | | ||||| ||||| || || Sbjct 78634 TCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGTACATCTCGGA 78575 Query 33606 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 33665 ||| ||||||||||| || || || || ||||||||| | ||||| | || || || Sbjct 78574 ATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCCGCAACTTGGAC 78515 Query 33666 TTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33724 |||| | || | | |||| || | ||||| || || ||||| ||| || |||| Sbjct 78514 TTCT-TTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAA 78456 Query 33725 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 33784 | || | ||||| | || |||| ||||| | || ||||| | | ||| | | | Sbjct 78455 AGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAGTGACGGG 78396 Query 33785 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33844 ||||| ||||| ||| ||||| || | ||||| || || || || ||||| |||| Sbjct 78395 TATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACA 78336 Query 33845 TGTTCCAGATGTCATAATATTGGATTGGGAAAATA 33879 | | ||| || | ||||| |||||||| ||| Sbjct 78335 TTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 78301 >seq156841 Length=49269 Score = 172 bits (190), Expect = 7e-38 Identities = 564/871 (65%), Gaps = 8/871 (1%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || || || || || || | || || || |||||||| || |||| || || Sbjct 12613 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 12672 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||||||||| |||| || | || | | | ||||| || | | Sbjct 12673 TCCATCCAATCAAACGGATTCTGCGCATTGTACAGCTTATCATAACCCAAAGCATCCAAC 12732 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 |||||||| || |||||||| || ||| | |||||| || | ||||||||| | || Sbjct 12733 AATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 12792 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 | || || || || | ||| || ||| || || ||||||| | ||| Sbjct 12793 GCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 12852 Query 33253 GATCTAACGGTTTCTTCACTCGG-TGGATGC--AATAAATGTTTAAACATCAAACATGCG 33309 |||| ||| ||| | | | | | || ||| || | | |||||| || Sbjct 12853 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGCA 12909 Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 ||||| ||||||| ||| ||||| || ||||| ||||| || || || | ||| ||| Sbjct 12910 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 12969 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 |||| || |||||||| | ||| ||||| | | ||| |||||| || || || ||| Sbjct 12970 ATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCT 13029 Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTT 33489 || || ||||||||||| | | ||| || | || ||| ||||| | Sbjct 13030 TCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGAACCATCGATCCAACGT 13089 Query 33490 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33549 | ||||| | |||||||| | ||||| || || || || | || || | | Sbjct 13090 AGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCTG 13149 Query 33550 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33609 ||||||| | | || || | || | || | | ||||| ||||| || || || Sbjct 13150 CTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTGG 13209 Query 33610 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 33669 ||||||||||| || || || || ||||||||| | ||||||| || || |||||| Sbjct 13210 ATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGGACTTCT 13269 Query 33670 GTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728 | || | | |||| || | ||||| || || ||||| ||| || ||||| || Sbjct 13270 -TTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGC 13328 Query 33729 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 | || || | || |||| |||| | || ||||| | | ||| | | | |||| Sbjct 13329 AAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGGTATC 13388 Query 33789 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTT 33848 ||||| ||| |||||||| | ||||| || || || || ||||| ||||| | Sbjct 13389 GGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTC 13448 Query 33849 CCAGATGTCATAATATTGGATTGGGAAAATA 33879 ||| || | ||||| |||||||| ||| Sbjct 13449 CCAAATTTGTGGGTATTGAATTGGGAACATA 13479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621637087530520