Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq80051 109 5e-19 seq116815 105 6e-18 seq66466 98.7 9e-16 seq162580 93.3 4e-14 seq23306 91.5 1e-13 seq27789 89.7 5e-13 seq118583 87.8 2e-12 seq99787 87.8 2e-12 seq129139 86.0 6e-12 seq48865 84.2 2e-11 seq379 84.2 2e-11 >seq80051 Length=167733 Score = 109 bits (120), Expect = 5e-19 Identities = 164/229 (72%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||| |||||||||| | || || |||| | | || | Sbjct 411 ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGAGGTTAACTC---C 467 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| ||| ||| ||||| ||||| || ||||| |||||| Sbjct 468 GACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 527 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGTCAGC-GACTATA 26946 ||||| | |||| | || |||||||| ||||||| | ||| || | || || || | Sbjct 528 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTT--GCTGATTACA 585 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | ||||| || ||||| ||| ||||||| || || | ||| | ||||| Sbjct 586 ATATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 634 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || | |||||||| | || || |||| | || Sbjct 3077 ATGCAAATCTTTGTTAAGACCCTCACTGGAAAGACCATAACACTCGAGGTTGAGAGTTCT 3136 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| ||||||| ||||| ||||| || |||| |||||| Sbjct 3137 GACACTATTGACAATGTTAAAACAAAGATTCAAGACAAGGAAGGAATTCCTCTAGATCAA 3196 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGTCAGC-GACTATA 26946 ||||| | |||| | || ||||||||||| |||| | ||| || | || || |||| Sbjct 3197 CAAAGGTTGATTTTTGCTGGAAAACAACTCGAGGATGGTCGAACACTT--GCTGATTATA 3254 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||| || ||||| || ||||||| || | | ||| | ||||| Sbjct 3255 ACATTCAGAAGGAATCCACACTCCATCTTGTGTTACGTCTTCGCGGAGG 3303 >seq116815 Length=25284 Score = 105 bits (116), Expect = 6e-18 Identities = 150/205 (73%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGA-ATCAAACGACACCATCGAGCAAGTCAAACA 26851 |||||||| | || || ||||| | || | | | |||||||| || | || ||| Sbjct 19578 ACTGGAAAGACCATAACACTCGAAGTTGAGAGCTCA-GACACCATTGACAATGTTAAAAC 19520 Query 26852 AAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAA 26911 ||||||| ||||| ||||| || ||||| || |||||||| | ||||| | || || Sbjct 19519 AAAGATTCAAGACAAGGAAGGAATTCCTCCAGACCAACAAAGGTTAATTTATGCTGGAAA 19460 Query 26912 ACAACTCGAAGATGATAGAA-ACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATC 26969 |||||||||||||| | ||| || | || || ||||||||||| || ||||| || || Sbjct 19459 ACAACTCGAAGATGGTCGAACACTT--GCTGATTATAACATTCAGAAGGAATCCACACTC 19402 Query 26970 CATCTGGTCCTGAGACTTAGAGGAG 26994 ||||| || || | ||| | |||| Sbjct 19401 CATCTTGTGTTGCGTCTTCGCGGAG 19377 >seq66466 Length=51600 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||||||||| | || ||| | || | ||| | Sbjct 29291 ATGCAGATCTTCGTTAAAACCCTAACTGGAAAGACCATAACCCTTGAGGTTGAAAGCTCC 29232 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || || |||||| ||||||||||| || || || || || Sbjct 29231 GACACTATTGACAACGTTAAGGCTAAGATTCAGGACAAAGAAGGAATCCCACCGGACCAG 29172 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| || || | || ||| || || |||||||| | |||| | | |||||| ||| Sbjct 29171 CAAAGGCTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCAGAACCCTAGCCGACTACAAC 29112 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| ||||| || | || |||| || | ||||||||||| Sbjct 29111 ATCCAAAAGGAATCGACCCTTCACTTGGTGCTCCGTCTTAGAGGAGG 29065 >seq162580 Length=72030 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| |||| || ||| | |||||| | ||| | ||| | Sbjct 31935 ATGCAAATCTTTGTTAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 31876 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | || || |||||| ||||| || || || || || || || Sbjct 31875 GACACTATCGACAACGTTAAGGCTAAGATTCAGGACAAGGAGGGAATCCCACCAGACCAG 31816 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||||| | |||| || ||| || ||||||||||| | |||| | | ||| || || || Sbjct 31815 CAAAGGTTGATTTTCGCCGGAAAGCAACTCGAAGACGGCAGAACCCT-AGCTGATTACAA 31757 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || ||||| || | || ||||||| Sbjct 31756 CATCCAGAAGGAATCGACCCTTCACTTGGTCCT 31724 >seq23306 Length=7682 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||| | || ||||| | || || |||| | || Sbjct 4725 ATGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTCGAGGTTGAGAGCTCG 4666 Query 26829 GACACCATCGAGCAA-GTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| || || || ||| ||| ||| ||||| ||||| || ||||| ||||| Sbjct 4665 GACACCATTGATAAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCA 4606 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGTCAGC-GACTAT 26945 |||||| | |||| | || ||||||||||| |||| | ||| || | || || || Sbjct 4605 ACAAAGGTTAATTTTTGCTGGAAAACAACTCGAGGATGGTCGAACACTT--GCTGATTAC 4548 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || ||||| ||| ||||||| || || | ||| | ||||| Sbjct 4547 AATATCCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 4498 >seq27789 Length=27798 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 |||||| | ||||| ||||| | |||||||| | || || | || | || | | | Sbjct 5503 ATGCAAATCTTTGTCAAAACCCTGACTGGAAAGACTATTACGCTTGAGGTCGAGAGCTCA 5444 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| || | ||||| |||||| ||||| || || || ||||| ||||| Sbjct 5443 -GACACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCTGATCA 5385 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||||| | |||| | ||||| ||||| ||||||| ||||| | || || || Sbjct 5384 ACAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGGTAGAACTCTTGCTGATTACAA 5325 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || ||||||| ||||| Sbjct 5324 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCT 5292 >seq118583 Length=73751 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAA 26826 ||||||| | ||||| || || |||||||||||| | ||||| | ||| | || | | Sbjct 38894 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACCATCACATTGGAAGTTGAGAGCTC 38835 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 | ||||| || || | || || ||||| || |||||||| || || || || | Sbjct 38834 A-GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACC 38776 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGTCAGC-GACTA 26944 | || || ||||| | | || ||||| | || |||| ||| | || | || ||||| Sbjct 38775 AGCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTT--GCTGACTA 38718 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||||||| || || || |||| || ||||| | ||| | || |||| Sbjct 38717 TAACATTCAAAAGGAGTCAACACTCCACCTAGTCCTCCGCCTTCGTGGTGGAA 38665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAA 26826 ||||||| | ||||| ||||| ||||| ||||| | ||||| | ||| | || | | Sbjct 38666 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAGACCATCACATTGGAAGTTGAGAGCTC 38607 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 | ||||| || || | || || ||||| || |||||||| || || || || | Sbjct 38606 A-GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCACCGGACC 38548 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGTCAGC-GACTA 26944 | || || ||||| | | || ||||| | || |||| ||| | || | || ||||| Sbjct 38547 AGCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTT--GCTGACTA 38490 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||||||| || || || |||| || ||||| | ||| | || |||| Sbjct 38489 TAACATTCAAAAGGAGTCAACACTCCACCTAGTCCTCCGCCTTCGTGGTGGAA 38437 >seq99787 Length=38434 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAA-TCA 26825 |||||| | ||||| ||||| | || ||||| | || || | | | |||| ||| Sbjct 19433 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATTACGCTTAAGGTCGAGAACTCA 19492 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||| || | ||||| |||||| || |||||||| || ||||| ||| Sbjct 19493 ---GACACCATTGACAATGTCAAGGTAAAGATCCAGGATAAAGAAGGTATTCCTCCTGAT 19549 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||||| | |||| | ||||| ||||| ||||||||||||| | ||||| Sbjct 19550 CAACAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGATAGAACTCTTGCTGACTAC 19609 Query 26946 AACATTCAAAAAGAATCTAC 26965 ||||| || ||||| || || Sbjct 19610 AACATCCAGAAAGAGTCCAC 19629 >seq129139 Length=45594 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| || || |||||||||||| | ||||| | ||| | || Sbjct 31563 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 31622 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || | || || || ||| || || ||||| || || || ||||| Sbjct 31623 GGACACGATTGACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGCATTCCACCGGATCA 31682 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || || |||| | || |||||| | ||||||| || | | |||||||| Sbjct 31683 GCAGAGGCTGATTTTTGCTGGGAAACAATTGGAAGATGGGAGGACTCTTGCTGACTATAA 31742 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| || || || |||| || ||||| | ||| | || |||| Sbjct 31743 CATTCAAAAGGAGTCAACACTCCACCTAGTCCTTCGCCTTCGTGGTGGAA 31792 >seq48865 Length=263615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 26857 TTACC--GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACA 26914 ||||| |||||||||||||||||||| || || || || || |||| | || ||||| Sbjct 56413 TTACCAGGACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTGATTTTTGCTGGAAAACA 56354 Query 26915 ACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCT 26974 | ||||||| | ||| | || || || || || |||||||| || | || || Sbjct 56353 GTTGGAAGATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACCT 56294 Query 26975 GGTCCTGAGACTTAGAGGAGGAAAAATATGATTA 27008 ||| |||| || |||||||| || |||||||| Sbjct 56293 GGTTTTGAGGCTCAGAGGAGG--AACTATGATTA 56262 >seq379 Length=4922 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| || ||||| ||| | || || | ||| | || Sbjct 4810 ATGCAAATCTTTGTGAAAACCTTGACTGGGAAAACTATTACTCTTGAAGTCGAGAGCTCG 4751 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||||| || || |||||||| || || || || Sbjct 4750 GACACCATCGACAATGTAAAGGCAAAGATTCAAGATAAGGAAGGGATTCCACCTGACCAG 4691 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || || |||| | || || || || ||||||| || || ||| || || || Sbjct 4690 CAGAGGCTTATTTTTGCTGGGAAGCAGCTTGAAGATGGAAG-GACACTAGCTGATTACAA 4632 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| || |||||||||| ||||| || || || || Sbjct 4631 TATCCAGAAGGAATCCACCCTCCATCTGGTGCTGAGGCTGAGGGGTGG 4584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477655731089840