Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq119769 107 5e-18 seq136437 95.1 3e-14 seq134413 95.1 3e-14 seq65957 87.8 5e-12 >seq119769 Length=87979 Score = 107 bits (118), Expect = 5e-18 Identities = 352/541 (65%), Gaps = 12/541 (2%) Strand=Plus/Plus Query 22481 CATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCAT 22540 |||| ||||| ||| | ||||||||||| || ||||| ||||| || |||||| | Sbjct 78714 CATTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCT 78773 Query 22541 TTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATG 22600 | ||||| || || ||| ||||||| || | | ||||| || |||| || || || | Sbjct 78774 TCTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACCTTCTCGAACG 78833 Query 22601 AGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATC 22660 |||| ||| | || || ||| | || |||||||| ||| |||| ||| | | Sbjct 78834 AGTTGATTTCAAGGGACGAAGGTTTGCACTGTGATTTTGCTTGTTTGCTTTAT---AGTT 78890 Query 22661 ATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAAC 22720 | | || ||| | | ||| || | ||| || || |||| || || Sbjct 78891 TGTTAAGGACGAAGCTTACTGAGGAACGAGTTAAGGGAATTGTTGCAGATGCTGTGGAGA 78950 Query 22721 TTGAACGTCTATTTATTTGCGAGGCGTTACC-AGTAAGTCTCATTGGTATCAATGCCGAA 22779 | ||| | ||| | || || ||| | || || | || | || || |||| || Sbjct 78951 TAGAAAGGGAGTTTGTGTGTGACGCGCTGCCTTGTGCG-CTGGTGGGAATGAATGGAGAT 79009 Query 22780 TCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCA 22839 | ||||| | ||| ||| |||| || || ||| | | || | | | ||||||| Sbjct 79010 TTGATGAGCAAATACATTGAATTCGTGGCTGATAGATTGTTGGATGCTTTGGGTTATGAT 79069 Query 22840 AAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAG 22899 ||| || || | ||||| ||||| |||||||| || ||| | |||| ||| Sbjct 79070 AAGTTATACAATGCTCAGAATCCGTTTGATTGGATGGAGCTGATTAGTTTACAAGGGAAG 79129 Query 22900 ACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATGCA--T 22957 || |||||||| || || |||||||| || || || ||||| ||||||| | || | Sbjct 79130 ACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAGAAAGCTTCTGTTATG--TCCAGTT 79187 Query 22958 TGAATG---ATAGTTCAAAACACGGATTTACATTAGATGAAGAATTTTAATTATTTGTAT 23014 |||||| || || | | || | || | || |||||||| || ||| | || |||| Sbjct 79188 TGAATGGGAATGGTGCTACTCATGAGTTCAAGTTGGATGAAGACTTCTAAATTTTAGTAT 79247 Query 23015 T 23015 | Sbjct 79248 T 79248 >seq136437 Length=81513 Score = 95.1 bits (104), Expect = 3e-14 Identities = 104/137 (76%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 111689 TCATCTTATG-TGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGC 111747 ||||||| || | ||||| |||||| | ||||| | | || || || |||||||||| Sbjct 23507 TCATCTTGTGGTTGCAGTTCTATGTAGCCAACGGGGAGTTATCCTGTCAGATGTATCAGC 23566 Query 111748 GATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTT 111807 ||||||||||||| ||||| || || || ||||| |||||| ||| || | || || | Sbjct 23567 GATCTGCTGATATGGGTCTGGGAGTGCCATTTAACATTGCATCTTATGCGTTGCTGACAT 23626 Query 111808 GCTTAATCGCTCATTTT 111824 || | || |||||| || Sbjct 23627 GCATGATAGCTCATGTT 23643 >seq134413 Length=102786 Score = 95.1 bits (104), Expect = 3e-14 Identities = 104/137 (76%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 111689 TCATCTTATG-TGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGC 111747 ||||||| || | ||||| |||||| | ||||| | | || || || |||||||||| Sbjct 2778 TCATCTTGTGGTTGCAGTTCTATGTAGCCAACGGGGAGTTATCCTGTCAGATGTATCAGC 2719 Query 111748 GATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTT 111807 ||||||||||||| ||||| || || || ||||| |||||| ||| || | || || | Sbjct 2718 GATCTGCTGATATGGGTCTGGGAGTGCCATTTAACATTGCATCTTATGCCTTGCTGACAT 2659 Query 111808 GCTTAATCGCTCATTTT 111824 || | || |||||| || Sbjct 2658 GCATGATAGCTCATGTT 2642 >seq65957 Length=165596 Score = 87.8 bits (96), Expect = 5e-12 Identities = 147/206 (71%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 363637 ATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGA 363696 || |||||||| | ||| || |||||| | |||||| ||||| ||| || || ||| Sbjct 147718 ATTGAGGGTATATATGATACTCTTAAGGAGTGTGCTGTTATTAGCAAATCAGCTGGGGGA 147659 Query 363697 ATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCAC-AGGGG 363754 ||||| || || | ||||| | ||||| || | ||||||||||| || || | || Sbjct 147658 ATTGGAGTTTCTGTGCACAACATACGTGCTACTGGG-AGTTACATTCGTGGAACAAATGG 147600 Query 363755 GATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCG 363814 || | || ||||| | ||||| ||||| ||||| || | | ||||| || || || | Sbjct 147599 GACA-TCAAATGGAATTGTTCCTATGCTGCGTGTATTCAATGACACTGCTAGATATGTTG 147541 Query 363815 ACCAGGGTGGAGGAAAGCGCAAAGGG 363840 |||| || || || || | |||||| Sbjct 147540 ACCAAGGAGGTGGCAAAAG-AAAGGG 147516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1300544006669154