Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq156841 170 2e-37 seq119769 170 2e-37 seq121296 82.4 1e-10 >seq156841 Length=49269 Score = 170 bits (188), Expect = 2e-37 Identities = 390/582 (67%), Gaps = 4/582 (1%) Strand=Plus/Plus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 |||||| || ||||| ||||| | ||| ||||| || |||||| ||||| || || || Sbjct 12900 CAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGT 12959 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 32775 | ||| ||||||| || |||||||| | ||| ||||| | | || | | | ||||| | Sbjct 12960 TAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGA 13018 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT 32835 | ||||| ||||| || |||||||||| | | ||| || | || ||| Sbjct 13019 AAAAAATACCTTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGAACCAT 13078 Query 32836 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 32895 ||||| | | ||||| | |||||||| | ||||| || || ||||| | || Sbjct 13079 CGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGC 13138 Query 32896 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 32955 || | | ||||||| | | || || | || | || | | ||||| |||| Sbjct 13139 GGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACA 13198 Query 32956 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGGTA 33014 | || || || ||||||||||| || ||||| || |||||| ||||| | ||||||| | Sbjct 13199 TCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA-CGCGCCTCGGCA 13257 Query 33015 ATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 33074 | || |||||| | || | | | |||| ||||| || || ||||| ||| Sbjct 13258 ACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCG 13317 Query 33075 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 33134 || ||||| || | || || | || |||| |||| | || ||||| | | ||| Sbjct 13318 GCGAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAG 13377 Query 33135 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194 | | | |||| ||||| ||| |||||||| | ||||| || || || || ||| Sbjct 13378 TGACGGGTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTT 13437 Query 33195 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 || ||||| | ||| || | | ||||||||||| || ||| Sbjct 13438 TTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 13479 >seq119769 Length=87979 Score = 170 bits (188), Expect = 2e-37 Identities = 569/876 (65%), Gaps = 16/876 (2%) Strand=Plus/Minus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| || || || || || | || || || |||||||| || |||| ||| || Sbjct 79168 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 79109 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 ||||| |||| || ||||| | |||| || | || | | | ||||| || | Sbjct 79108 CTCCATCCAATCAAACGGATTCTGAGCATTGTATAACTTATCATAACCCAAAGCATCCAA 79049 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 ||||||||| || || ||||| || ||| | |||||| || | ||||||||| | || Sbjct 79048 CAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG 78989 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 | || || || || | ||| || ||| || || || |||| | ||| Sbjct 78988 CGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 78929 Query 32609 AGATCTTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGC 32665 | ||| ||| ||| | | | | | || ||| || | | |||||| || Sbjct 78928 TCCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGC 78872 Query 32666 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 32725 ||||| ||||| | ||| ||||| || ||| || ||||| || || || | ||| || Sbjct 78871 AAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCAGG 78812 Query 32726 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTC 32784 ||||| || |||||||| | ||| ||||| | | || | | | ||||| || ||||| | Sbjct 78811 CATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGAAAAAAATAC 78753 Query 32785 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCATGTATCC 32841 |||| || ||||| |||| | | ||| || | ||| | ||| |||| Sbjct 78752 CTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCC 78696 Query 32842 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 32901 | | | ||||| | |||||||| | ||||| || || ||||| | || || | Sbjct 78695 AACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATA 78636 Query 32902 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 32961 | ||||||| | | || || | || | || | | ||||| ||||| || | Sbjct 78635 ATCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGTACATCTCGG 78576 Query 32962 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGTAATCTGT 33020 |||| ||||||||||| || ||||| || |||||||| ||| | ||||| | || || Sbjct 78575 AATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA-CGCGCCTCCGCAACTTGG 78517 Query 33021 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33080 |||||| | || | | | |||| ||||| || || ||||| ||| || ||| Sbjct 78516 ACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAA 78457 Query 33081 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 33140 || || | ||||| | || |||| ||||| | || ||||| | | ||| | | | Sbjct 78456 AAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAGTGACGG 78397 Query 33141 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33200 ||||| ||||| ||| ||||| || | ||||| || || || || ||||| ||| Sbjct 78396 GTATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTAC 78337 Query 33201 ATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 || | ||| || | | ||||||||||| || ||| Sbjct 78336 ATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 78301 >seq121296 Length=44911 Score = 82.4 bits (90), Expect = 1e-10 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| ||||||||||| || ||||| || ||||| |||||| || ||| | | || Sbjct 5471 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 5412 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63584 ||||| | || || || || ||||| | ||| || || || || | || | ||| | Sbjct 5411 ATACGTTTTGATGGCAGATTCAATATCATCCTTG-TGTATCCCAACAGATACTCTCATCA 5353 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 |||||| || || ||||| || | || | || || || | ||| || | || | Sbjct 5352 GCATGTGGTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 5293 Query 63645 AAGTTTTAAAACCAAAATA 63663 | ||||| ||||||||||| Sbjct 5292 AGGTTTTGAAACCAAAATA 5274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632299416461200