Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq80051 113 4e-20 seq116815 102 7e-17 seq23306 98.7 8e-16 seq86621 96.9 3e-15 seq129139 87.8 2e-12 seq133954 84.2 2e-11 seq66466 82.4 6e-11 seq64032 82.4 6e-11 seq48865 82.4 6e-11 seq7707 82.4 6e-11 >seq80051 Length=167733 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGG--AACCCA 111244 |||||||| ||||| || || | || || || |||||||| | || || ||| | Sbjct 411 ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGA---GGTTAACTC- 466 Query 111245 GCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATC 111304 ||| || ||| | | || ||| ||||||| ||||| ||||| |||| |||| Sbjct 467 -CGACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATC 525 Query 111305 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111364 |||||||| | |||| ||| || |||||| | |||||| | ||| | || ||||| | Sbjct 526 AACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACACTTGCTGATTACA 585 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||| || || ||||| || || ||| | ||||||||||| ||||| || Sbjct 586 ATATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 634 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 111263 TAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATG 111322 ||||||||| | || ||||| ||||| |||| | |||||||||||| | |||| || Sbjct 3154 TAAAACAAAGA-TTCAAGACAAGGAAGGAATTCCTCTAGATCAACAAAGGTTGATTTTTG 3212 Query 111323 CGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTA 111382 | || |||||| | || ||| | ||| | || |||||||| || || || ||||| | Sbjct 3213 CTGGAAAACAACTCGAGGATGGTCGAACACTTGCTGATTATAACATTCAGAAGGAATCCA 3272 Query 111383 CACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||| ||| | ||||| ||||| ||||| || Sbjct 3273 CACTCCATCTTGTGTTACGTCTTCGCGGAGG 3303 >seq116815 Length=25284 Score = 102 bits (112), Expect = 7e-17 Identities = 112/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 111263 TAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATG 111322 ||||||||| | || ||||| ||||| |||| || ||||||||| | ||||||| Sbjct 19525 TAAAACAAAGA-TTCAAGACAAGGAAGGAATTCCTCCAGACCAACAAAGGTTAATTTATG 19467 Query 111323 CGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTA 111382 | || |||||| | |||||| | ||| | || |||||||| || || || ||||| | Sbjct 19466 CTGGAAAACAACTCGAAGATGGTCGAACACTTGCTGATTATAACATTCAGAAGGAATCCA 19407 Query 111383 CACTACATTTAGTGTTGCGTCTGCGCGG 111410 |||| ||| | ||||||||||| ||||| Sbjct 19406 CACTCCATCTTGTGTTGCGTCTTCGCGG 19379 >seq23306 Length=7682 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 111263 TAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATG 111322 ||||||||||| || ||||| ||||| |||| |||||||||||| | |||| || Sbjct 4647 TAAAACAAAAA-TTCAAGACAAGGAAGGAATTCCTCCAGATCAACAAAGGTTAATTTTTG 4589 Query 111323 CGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTA 111382 | || |||||| | || ||| | ||| | || ||||| ||||| || || ||||| | Sbjct 4588 CTGGAAAACAACTCGAGGATGGTCGAACACTTGCTGATTACAATATCCAGAAGGAATCCA 4529 Query 111383 CACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || ||| | ||||||||||| ||||| || Sbjct 4528 CTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 4498 >seq86621 Length=111109 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| || || |||| || ||||| || || ||||| || || Sbjct 91592 AATGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCAC 91651 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || || ||| | || || |||||| || || ||||| |||| || || Sbjct 91652 GGACACTATTGATAACGTTAAGGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 91711 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||||||| |||| ||| || || |||||||||||| ||| |||| |||||||| Sbjct 91712 ACAAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 91771 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| || || || || || |||| | || || || ||||| Sbjct 91772 TATTCAAAAGGAGTCAACGCTCCACCTAGTCCTTCGCCTTCGTGGTGG 91819 >seq129139 Length=45594 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| || || | || || ||||| || || ||||| || | Sbjct 31563 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 31622 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | ||| | | || || |||||| || || |||||| |||| ||||| Sbjct 31623 GGACACGATTGACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGCATTCCACCGGATCA 31682 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || ||||| |||| ||| || ||||||||||||||| | ||| | || || ||||| Sbjct 31683 GCAGAGGCTGATTTTTGCTGGGAAACAATTGGAAGATGGGAGGACTCTTGCTGACTATAA 31742 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || ||||| || |||| | || || || ||||| Sbjct 31743 CATTCAAAAGGAGTCAACACTCCACCTAGTCCTTCGCCTTCGTGGTGG 31790 >seq133954 Length=6269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||||||||| |||| || || ||||| || ||||| ||| | Sbjct 5581 ATGCAGATTTTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 5522 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111305 || || ||| | | || || |||||| || |||||||| | |||| | ||||| Sbjct 5521 GACACTATTGACAACGTGAAGGCCAAAATTCAGGATAAAGAAGG-GATCCCACCAGATCA 5463 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || ||||| || | ||| || || || |||| ||| || | || ||||| || Sbjct 5462 GCAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTACAA 5403 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| ||||| ||||| || | ||| | || || || ||||| Sbjct 5402 TATCCAAAAGGAATCCACACTCCACCTTGTGCTTCGCCTTCGTGGTGG 5355 >seq66466 Length=51600 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || ||| | ||||| |||||||| || |||| |||| Sbjct 28379 ATGCAGATTTTTGTGAAGACGTTAACCGGGAAAACCATCACTTTGGAGGTGGAAAGTTCT 28320 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || ||| || ||| ||||| || || | ||| ||||| Sbjct 28319 GATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATCCCCCG-GATCAG 28261 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | |||||| || |||||||||||| ||| | || ||||| || Sbjct 28260 CAGAGGCTGATCTTTGCGGGAAAGCAATTGGAAGATGGACGAACCCTCGCTGATTACAAC 28201 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || || || || || | || | ||||| || ||||| Sbjct 28200 ATTCAGAAGGAGTCCACCCTGCACCTTGTCCTCCGTCTCCGTGGTGG 28154 >seq64032 Length=36390 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||||||||| || | || || || ||||| || |||| ||| | Sbjct 9857 ATGCAGATTTTTGTCAAGACTCTAACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCA 9798 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || ||| ||| ||| ||||| || || |||| ||||| Sbjct 9797 GATACTATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAG 9738 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| |||| ||| || || || |||| ||| | || | || |||||||| Sbjct 9737 CAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACCCTTGCAGATTATAAC 9678 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 || || |||||||| || || || | ||| | ||||| || |||||| Sbjct 9677 ATCCAGAAAGAATCCACCCTTCACCTCGTGCTTCGTCTCCGTGGTGGC 9630 >seq48865 Length=263615 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||||||||| | || || || || ||||| |||| ||| || ||||| |||||| Sbjct 56406 GACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTGATTTTTGCTGGAAAACAGTTGGAA 56347 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111389 ||| | |||| |||| ||||| ||||| || |||||||| ||||| || Sbjct 56346 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCA 56297 >seq7707 Length=91995 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||||||||| | || ||||| || ||| | |||| ||| || ||||| |||||| Sbjct 30963 GACAAAGAAGGGATACCTCCTGATCAGCAGAGGTTGATTTTTGCTGGAAAACAGTTGGAA 31022 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111389 ||| | |||| |||| ||||| ||||| || |||||||| ||||| || Sbjct 31023 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCA 31072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422172552117400