Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq156841 147 4e-30 seq119769 134 3e-26 >seq156841 Length=49269 Score = 147 bits (162), Expect = 4e-30 Identities = 314/461 (68%), Gaps = 15/461 (3%) Strand=Plus/Minus Query 42399 GAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAAT 42458 |||| | |||| ||| || | || ||||| ||||||||||| |||||||| || Sbjct 13355 GAAAGGCATTTCATCACTCACGTCCTTGCCTTTTTCGCCGCCTCAGACGGCATCGTTTTA 13296 Query 42459 GAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTT-C 42515 || ||||| ||| |||||||||||||| || || | || |||||||| ||||| | Sbjct 13295 GAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCA--AGTTGCCGAGGCGCG-TGCTTTC 13239 Query 42516 TACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC-TCAA 42574 ||||||||||| || || || || ||| | ||||| ||| |||| || |||| || | Sbjct 13238 TACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTA---CAGTCTGCTTCTA 13182 Query 42575 CA--CGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATG 42632 | |||||||| ||| | | ||| | | | | ||| || | ||||| || Sbjct 13181 GAGTCGTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATC 13122 Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||| | ||||||||||| | ||||| || |||||||| || |||| ||| Sbjct 13121 CCCTGTGTTGAGAAGAAGGCGAAGTGGGCCCTACGTTGGATCGATGGTTCCGA---AACA 13065 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | ||| | |||| |||||| | || || || || || ||||| || |||| Sbjct 13064 TTTGCGGAGCGTTTGGTTGCCTTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTC 13005 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 | || |||||| | || || || || ||||| ||| | || ||||||||||| Sbjct 13004 TGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACTTTCTCGAACGAG 12945 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTG 42853 | || |||||||| || |||| | || ||||| || Sbjct 12944 TTAATTTCAAGGGACGAAGGTTTGCACTGTGATTTTGCTTG 12904 >seq119769 Length=87979 Score = 134 bits (148), Expect = 3e-26 Identities = 297/437 (68%), Gaps = 15/437 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| ||||||||||| |||||||| || || ||||| ||| ||||||||| Sbjct 78449 CTTGCCTTTTTCGCCGCCTCAGACGGCATCGTTTTAGAAAACCTAGCCGGAAGGTTCATG 78508 Query 42483 AAAGAGGTGCAGTACTT--TGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAG 42539 ||||| || || | || |||||||| ||| |||||||||||||| || || || || Sbjct 78509 AAAGAAGTCCA--AGTTGCGGAGGCGCG-TGCTTTCTACGGCTTCCAAATCGCGATTGAA 78565 Query 42540 AACGTGCACTCTGAGGTGTACGCCAAACTGC-TCAACA--CGTACATCCTGGATCCCGTC 42596 ||| | || || ||| |||| || |||| || | | | |||||| ||| | | | Sbjct 78566 AACATCCATTCCGAGATGTA---CAGTCTGCTTCTAGAGTCTTACATCAAGGACTCTGAC 78622 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 || | | | | ||| || | ||||| || ||||| | ||||||||||| | Sbjct 78623 GAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATCCCCTGTGTTGAGAAGAAGGCGAAG 78682 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 ||||| || |||||||| || |||| ||| || | ||| | |||| || ||| Sbjct 78683 TGGGCACTACGTTGGATCGACGGTTCCGA---AACATTTGCGGAGCGTTTGGTTGCATTT 78739 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 | || || || || || ||||| || |||| | || |||||| | || || Sbjct 78740 GCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTCTGTGCTATATTCTGGTTAAAAAAG 78799 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 || || ||||| ||| | |||||||||||||| | || |||||||| || || Sbjct 78800 CGGGGGTTAATGCCTGGATTAACCTTCTCGAACGAGTTGATTTCAAGGGACGAAGGTTTG 78859 Query 42837 CATAGGGACTTTGCCTG 42853 || | || ||||| || Sbjct 78860 CACTGTGATTTTGCTTG 78876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942353172032720