Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq140303 93.3 4e-14 seq115442 91.5 1e-13 seq134413 89.7 5e-13 seq136437 84.2 2e-11 >seq140303 Length=60193 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 ||||||||||||||| | ||| | || || | | ||| ||||||||||| || || Sbjct 56244 ACCAGTAACATGAGCTACCATGCATGTCAACAAAGCATATGATGCAATGTTAAATGGCAC 56303 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 |||||||||||| ||| | || | |||||||| |||||||| | ||| || | || || Sbjct 56304 TCCCAAACCCATATCTGCAGAGCGCTGATACATTTGACAGGATAACTCCCCATTGGCAAC 56363 Query 20359 ATAAAATTG 20367 |||||| || Sbjct 56364 ATAAAACTG 56372 >seq115442 Length=49073 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 ||||||||||||||| | ||| | || || | | ||| || |||||||| || || Sbjct 12791 ACCAGTAACATGAGCTACCATGCATGTCAACAAAGCATATGATGCGATGTTAAATGGCAC 12850 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 |||||||||||| ||| | || | |||||||| |||||||| | ||| || | || || Sbjct 12851 TCCCAAACCCATATCTGCAGAGCGCTGATACATTTGACAGGATAACTCCCCATTGGCAAC 12910 Query 20359 ATAAAATTGACATAACAAG 20377 |||||| || || |||||| Sbjct 12911 ATAAAACTG-CA-AACAAG 12927 >seq134413 Length=102786 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 ||||| ||||||||| | ||| | || | | || ||| ||||||||||| || || Sbjct 2636 ACCAGAAACATGAGCTATCATGCATGTCAGCAAGGCATAAGATGCAATGTTAAATGGCAC 2695 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 ||||| |||||| || | || | |||||||| ||||||||| | ||| |||| ||||| Sbjct 2696 TCCCAGACCCATATCAGCAGATCGCTGATACATCTGACAGGATAACTCCCCGTTGGCTAC 2755 Query 20359 ATAAAATTG 20367 ||| || || Sbjct 2756 ATAGAACTG 2764 >seq136437 Length=81513 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 ||||| ||||||||| | ||| | || | | | ||| ||||||||||| || || Sbjct 23649 ACCAGAAACATGAGCTATCATGCATGTCAGCAACGCATAAGATGCAATGTTAAATGGCAC 23590 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 ||||| |||||| || | || | |||||||| ||||||||| | ||| |||| ||||| Sbjct 23589 TCCCAGACCCATATCAGCAGATCGCTGATACATCTGACAGGATAACTCCCCGTTGGCTAC 23530 Query 20359 ATAAAATTG 20367 ||| || || Sbjct 23529 ATAGAACTG 23521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440444554381480