Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq27789 100 2e-16 seq66466 95.1 1e-14 seq142367 93.3 3e-14 seq133954 89.7 4e-13 seq126260 87.8 1e-12 seq158565 86.0 5e-12 seq14756 84.2 2e-11 seq99573 82.4 6e-11 >seq27789 Length=27798 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| || || || || ||||| || || ||| ||||||||||||||||||||| Sbjct 5049 CCACCTCTAAGACGAAGAACAAGATGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGCC 5108 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| | | |||| || | |||||| |||||||| ||||| | |||||| ||| || Sbjct 5109 AATGTCCTCCCGTCCTCAAGTTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCCGGAGGA 5168 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTC-ACACTATCAGTAGATTC 34076 | | || |||| | | | | ||||||| || | || | | |||| | | ||| Sbjct 5169 ATACCTTCCTTGT-CTTGAATCTTTGCTTTTACATTG---TCGATAGTATCTGAACTTTC 5224 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || || || ||||| ||||| || |||||||| ||||| Sbjct 5225 AACTTCAAGGGTGATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCAT 5275 >seq66466 Length=51600 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/234 (70%), Gaps = 7/234 (3%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || || || || || || || ||| ||||||||||||||||||||| Sbjct 28150 GAAACCACCACGGAGACGGAGGACAAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAATC 28209 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 || | ||| | || ||||||||||| || ||||| ||||| | |||||||||| Sbjct 28210 AGCGAGGGTTCGTCCATCTTCCAATTGCTTTCCCGCAAAGATCAGCCTCTGCTGATCC-G 28268 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTT---TTGCTTAATGGAACTCACACTATCAGTAGA 34073 || | | ||| |||||| ||| || || | | || | | | |||||| | Sbjct 28269 GGGGATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCA---ATAGTATCAGAACT 28325 Query 34074 TTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| || | || || ||||| ||||||| || |||||||| || ||||| Sbjct 28326 TTCCACCTCCAAAGTGATGGTTTTCCCGGTTAACGTCTTCACAAAAATCTGCAT 28379 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || |||| ||||| || ||||||||| ||||||||||| || | ||| Sbjct 28846 AGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCGAGGGTTCGG 28905 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||| |||||||| ||||| | ||||| || || | | |||| Sbjct 28906 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCGGGTGGGATTCCCTCT 28965 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 || ||| ||||| ||||| | | | | | || | ||| ||| | || Sbjct 28966 TTATCCTGGATTTTCGCCTTAACGTTATCAATAGTGTCGGAGCTTTCAACTTCAAGGGTG 29025 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||||||| |||||||| ||||| || ||||||||||| Sbjct 29026 ATTGTTTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 29063 >seq142367 Length=42869 Score = 93.3 bits (102), Expect = 3e-14 Identities = 168/238 (71%), Gaps = 12/238 (5%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || ||||||| |||||| ||||| || || |||||||||||| |||||||| Sbjct 563 GAATCCACCCCTCAGCCTCAGCACAAGATGGAGAGTAGACTCCTTCTGAATATTGTAATC 622 Query 33957 TGCCAATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || ||| |||| || | || ||||| ||||| || ||||| || || | |||||| || Sbjct 623 TG-CAAGTGTC-CTACCATCCTCCAACTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCT 680 Query 34015 ACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTA 34071 || | | ||| || ||| ||| || ||| | || | || | || | | Sbjct 681 GGTGGAATACCCTCCTTATCCTGAATCTTCGCCTTCACATTGTCAATC---GTGTCTG-A 736 Query 34072 GAT-TCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | | || ||| | || || |||||||| |||| ||||| ||||||||||||||| Sbjct 737 GCTCTCAACTTCTAATGTGATGGTTTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 794 >seq133954 Length=6269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| |||| |||||||||||| || ||||||||| ||||| ||||| | Sbjct 5582 ACCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAG- 5640 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| |||| | | || || | |||||| || |||||||||| |||||||| || | Sbjct 5641 CAAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTGCTGGTCAGGGG 5700 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | | || ||||| |||||| ||| | | | ||| | | | | | || | Sbjct 5701 GAATTCCTTCCTTGTCTTGAATTTTGGCCTTCACGTTA-TCA-ATTGTGTCTGAACTCTC 5758 Query 34079 A--TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | |||| || || |||||||| || ||||| || ||||| || ||||| Sbjct 5759 AACCTCGAGAGTAATGGTTTTTCCAGTGAGTGTCTTTACAAATATCTGCAT 5809 >seq126260 Length=96127 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| |||| |||||||||||| || ||||||||| ||||| ||||| | Sbjct 61716 ACCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAG- 61774 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| |||| | | || || | |||||| || |||||||||| |||||||| || Sbjct 61775 CAAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTGCTGGTC 61829 >seq158565 Length=44421 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| ||| |||| ||| || ||| |||||||||||||||||| || | | Sbjct 35649 CCTCCCCTCAGCCTCAGTACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCG-C 35707 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || ||||| ||||| || ||||| ||||| | |||||| || Sbjct 35708 AAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTC 35761 >seq14756 Length=34955 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| |||||||| || ||||||||| | ||||||||| || | ||| Sbjct 26569 AGACGGAGCACGAGATGAAGAGTCGACTCCTTCTGGAGGTTGTAATCGGCTAGGGTTCGG 26628 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||||| |||| ||||| ||||| || ||||| ||||||||||| Sbjct 26629 TCGTCTTCCAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATC 26672 >seq99573 Length=152460 Score = 82.4 bits (90), Expect = 6e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| ||| |||| || || ||| |||||||||||||||||| || | | Sbjct 109590 CCTCCCCTCAGCCTCAGTACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCG-C 109532 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || ||||| ||||| || ||||| ||||| | |||||| || Sbjct 109531 AAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTC 109478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396248219454094