Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq29931 87.8 2e-12 seq90921 84.2 3e-11 seq74037 82.4 9e-11 seq3570 82.4 9e-11 >seq29931 Length=30124 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/163 (73%), Gaps = 10/163 (6%) Strand=Plus/Minus Query 30460 CACTTTGCCGCACAAAGTCATGTGGACAACTCATTTATAAGTCCACTTGGTTTCACATTA 30519 || ||||| ||||| | ||||||||| || |||||| || | || ||| |||||| | Sbjct 18435 CATTTTGCAGCACAGACTCATGTGGATAATTCATTTGGAAATTCATTTGAGTTCACAATC 18376 Query 30520 GATAATACGTATGGAACACACGCACTTGTTGAAATGTGTAGAAGGCATACACCAAATGTA 30579 |||||| ||||| ||||| | |||| ||||| |||| || | || |||| || Sbjct 18375 AATAATATTTATGGTACACATGTACTTCTTGAAGCTTGTA--AG---TTGACTAAATCTA 18321 Query 30580 ----GAG-TTCATACATTTTAGTACAGATGAAGTATACGGCGA 30617 ||| ||||| ||| |||||||||||||||| || || || Sbjct 18320 TCAAGAGATTCATTCATGTTAGTACAGATGAAGTTTATGGTGA 18278 >seq90921 Length=83348 Score = 84.2 bits (92), Expect = 3e-11 Identities = 243/367 (66%), Gaps = 8/367 (2%) Strand=Plus/Plus Query 10789 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 10848 |||||| || ||||| | || | || |||||| ||||| || || || ||||| Sbjct 75488 ATCAAATCGCCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 75547 Query 10849 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 10908 | || | || || || | || || |||||||| || ||||| ||||| || | Sbjct 75548 AACAACTATTATACCAGTATTTCCTTCGAAACCATCCATTTCCGTCAATAGTTGGTTCAG 75607 Query 10909 GGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACG 10966 ||| ||||| | |||||||||| | | | | | || | | | |||| || || Sbjct 75608 GGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAACA 75665 Query 10967 GCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTT-CACGGGCAACTTCAAAGAT 11025 || ||||||||||| | || || || || || ||||| | || | ||| ||| | Sbjct 75666 GCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA-AG 75724 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACA 11085 ||| ||||||| ||| || ||||| |||||||| || ||||| | | | ||| | Sbjct 75725 ATCGCGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA-A 75783 Query 11086 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 ||| || || || || | |||||| || || || || || ||||| ||||| | Sbjct 75784 TTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTTTTCCCAG 75843 Query 11145 TCCCAGG 11151 | ||||| Sbjct 75844 TACCAGG 75850 >seq74037 Length=168758 Score = 82.4 bits (90), Expect = 9e-11 Identities = 118/163 (72%), Gaps = 10/163 (6%) Strand=Plus/Minus Query 30460 CACTTTGCCGCACAAAGTCATGTGGACAACTCATTTATAAGTCCACTTGGTTTCACATTA 30519 || ||||| ||||| | ||||||||| || |||||| || | || ||| |||||| | Sbjct 21425 CATTTTGCAGCACAGACTCATGTGGATAATTCATTTGGAAATTCATTTGAGTTCACAATC 21366 Query 30520 GATAATACGTATGGAACACACGCACTTGTTGAAATGTGTAGAAGGCATACACCAAATGTA 30579 |||| | ||||| ||||| | |||| ||||| |||| || | || |||| || Sbjct 21365 AATAACATTTATGGTACACATGTACTTCTTGAAGCTTGTA--AG---TTGACTAAATCTA 21311 Query 30580 ----GAG-TTCATACATTTTAGTACAGATGAAGTATACGGCGA 30617 ||| ||||| ||| |||||||||||||||| || || || Sbjct 21310 TCAAGAGATTCATTCATGTTAGTACAGATGAAGTTTATGGTGA 21268 >seq3570 Length=110709 Score = 82.4 bits (90), Expect = 9e-11 Identities = 190/279 (68%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGC 10936 || |||||||| || ||||| ||||| || | ||| ||||| | |||||||||| | | Sbjct 53315 AAACCATCCATTTCCGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTCCCT--C 53258 Query 10937 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 10994 | | | || | | | |||| || || || ||||||||||| | || || || | Sbjct 53257 CTCCAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGC 53198 Query 10995 ACGGTTGATTTT-CACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 | || ||||| | || | ||| ||| | ||| ||||||| ||| || ||||| Sbjct 53197 AGGGAGCATTTTCCTTGGCCTTCTTGAAA-AGATCACGGACTCGAGAGGCTCCTACACCA 53139 Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 11112 |||||||| || ||||| | | | ||| |||| || || || || | |||||| Sbjct 53138 ACAAACATCTCAACAAATTCTGAACCTGAA-ATTGAGAAAAATGGAACACCCGCTTCACC 53080 Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || || || || || ||||||||||| || ||||| Sbjct 53079 AGCAATTGCCTTTGCTAGCAGGGTCTTCCCAGTACCAGG 53041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596097313110760