Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq90921 84.2 3e-11 seq3570 82.4 9e-11 >seq90921 Length=83348 Score = 84.2 bits (92), Expect = 3e-11 Identities = 243/367 (66%), Gaps = 8/367 (2%) Strand=Plus/Plus Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763 |||||| || ||||| | || | || |||||| ||||| || || || ||||| Sbjct 75488 ATCAAATCGCCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 75547 Query 12764 GATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 12823 | || | || || || | ||||| |||||||| || ||||| ||||| || | Sbjct 75548 AACAACTATTATACCAGTATTTCCTTCGAAACCATCCATTTCCGTCAATAGTTGGTTCAG 75607 Query 12824 GGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACG 12881 ||| ||||| | |||||||||| | | | | | || | | | |||| || || Sbjct 75608 GGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAACA 75665 Query 12882 GCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAA-CTTCAAAGAT 12940 || |||||||| |||| || || || || || |||||| ||| ||| ||| | Sbjct 75666 GCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA-AG 75724 Query 12941 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACA 13000 ||| || |||| ||| || ||||| ||||||||||| ||||| | | | ||| | Sbjct 75725 ATCGCGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA-A 75783 Query 13001 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 13059 ||| || || || || | |||||| || || || || || ||||| ||||| | Sbjct 75784 TTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTTTTCCCAG 75843 Query 13060 TCCCTGG 13066 | || || Sbjct 75844 TACCAGG 75850 >seq3570 Length=110709 Score = 82.4 bits (90), Expect = 9e-11 Identities = 198/293 (68%), Gaps = 8/293 (3%) Strand=Plus/Minus Query 12778 CCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTT 12837 ||||| || | ||| |||||||| || ||||| ||||| || | ||| ||||| | || Sbjct 53329 CCGTCCATTTCTNGAAACCATCCATTTCCGTCAATAGTTGGTTCAGGGTCTGTTCCCTTT 53270 Query 12838 CATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTC 12895 |||||||| | | | | | || | | | |||| || || || |||||||| || Sbjct 53269 CATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATC 53212 Query 12896 AATGAAAACGATACACGGTTGATTTTCACGGGCAA-CTTCAAAGATATCTCGCACTCTCT 12954 || || || || || || |||||| ||| ||| ||| | ||| || |||| Sbjct 53211 AACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA-AGATCACGGACTCGAG 53153 Query 12955 TGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGG 13013 ||| || ||||| ||||||||||| ||||| | | | ||| |||| || || || Sbjct 53152 AGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA-ATTGAGAAAAATGGA 53094 Query 13014 ACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | |||||| || || || || || ||||||||||| || || || Sbjct 53093 ACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCAGTACCAGG 53041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612216940676520