Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq142367 105 5e-18 seq130076 98.7 7e-16 seq129139 96.9 2e-15 seq86621 96.9 2e-15 seq66466 89.7 4e-13 seq53431 89.7 4e-13 seq102018 86.0 4e-12 seq162580 82.4 5e-11 seq126260 82.4 5e-11 >seq142367 Length=42869 Score = 105 bits (116), Expect = 5e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| ||||||||||| || | | || |||| |||||||| ||||| |||| Sbjct 1743 TCCTTTTGAATATTATAATCTGCGAGAGTACGCCCATCTTCCAATTGCTTCCCTGCAAAT 1802 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||||| || | || |||||||| |||||| |||| ||| Sbjct 1803 ATCAGCCTCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGTATTTTCGCCTTAA-CGTT 1861 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||||| | ||| || || ||||| || |||||||| || ||||| || || || Sbjct 1862 GTCAATCGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTTCCCGGTTAAGGTCTTAAC 1921 Query 39708 GAAGATCTGCAT 39719 ||||| ||||| Sbjct 1922 AAAGATTTGCAT 1933 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC----ATCGTCCAATTGTTTCCCGC 39583 ||| || || || |||||||| |||| |||||| ||| || ||||| ||||| Sbjct 2198 TTCCTTCTGGATGTTATAATCAGCCA----GCGTTCTTCCATCTTCTAATTGCTTCCCAG 2253 Query 39584 CAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA 39643 | ||||| | | |||||| || | || | ||||| || || ||||| |||| Sbjct 2254 CGAAAATCAGCCTCTGCTGGTCTGGCGGGATACCTTCCTTATCTTGGATTTTCGCCTTAA 2313 Query 39644 TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTT 39703 | | | |||||||| ||| || || ||||| ||||| ||||| || ||||| |||| Sbjct 2314 CATTATCAATTGTGTCTGAGCTCTCAACTTCCAATGTAATGGTTTTCCCAGTTAAGGTTT 2373 Query 39704 TTACGAAGATCTGCAT 39719 | || ||||||||||| Sbjct 2374 TAACAAAGATCTGCAT 2389 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| || ||||| || || | | | |||| |||||||| || || |||| Sbjct 831 TCCTTTTGAATGTTATAGTCAGCAAGAGTCCTCCCATCTTCCAATTGCTTTCCTGCAAAT 890 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||||| | | |||||| ||||| |||||| |||| | Sbjct 891 ATCAGCCTCTGCTGATCCGGTGAGATGCCTTCCTTGTCTTGAATTTTTGCCTTAACATTG 950 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | ||| || || ||||| || |||||||| || ||||| || || || Sbjct 951 TCAATCGTGTCCGAGCTCTCAACTTCCAATGTGATTGTTTTCCCGGTTAAGGTCTTAACA 1010 Query 39709 AAGATCTGCAT 39719 ||||| ||||| Sbjct 1011 AAGATTTGCAT 1021 >seq130076 Length=26012 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | |||| ||| || || || || ||||| || Sbjct 4157 CCACCACGGAGACGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCT 4098 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| |||| ||||| ||| | ||||| | |||||||| |||| || Sbjct 4097 AGGGTTCGGCCATCCTCCAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGA 4038 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||| ||||| || ||| || | ||| | | | |||||| | | ||| || Sbjct 4037 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCA-CGTTGTCGATTGTGTCGGAGGATTCGAC 3979 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || |||||||||| ||||| |||||||||||||| Sbjct 3978 CTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 3931 >seq129139 Length=45594 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| || |||||||| || | | || |||| |||||||||||||| ||||| Sbjct 30842 TCCTTTTGAATGTTATAATCTGCGAGAGTACGCCCATCTTCCAATTGTTTCCCTGCAAAA 30783 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||||| || | || || ||||| ||||| |||| | Sbjct 30782 ATCAGCCTCTGCTGATCCGGCGGGATACCCTCCTTGTCTTGAATTTTCGCCTTAACATTA 30723 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 ||| ||||| | ||||| || |||| || || ||||| || |||| ||||| || Sbjct 30722 TCTATCGTGTCCGAGCTTTGAACTTCCAGTGTGATGGTTTTTCCAGTTATGGTTTTAACA 30663 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 30662 AAGATCTGCAT 30652 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| || ||||| || || | | | |||| |||||||||||||| ||||| Sbjct 31754 TCCTTTTGAATGTTATAGTCAGCAAGAGTCCTCCCATCTTCCAATTGTTTCCCAGCAAAA 31695 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||||| || | |||||| || || ||||| |||| | Sbjct 31694 ATCAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTATCTTGAATTTTGGCCTTAACATTG 31635 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | ||| || || ||||| || |||||||| || ||||| || || || Sbjct 31634 TCAATCGTGTCCGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACA 31575 Query 39709 AAGATCTGCAT 39719 ||||| ||||| Sbjct 31574 AAGATTTGCAT 31564 >seq86621 Length=111109 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| ||| | || || | || | ||| ||| || || || |||||||| || Sbjct 92048 GCCACCTCTCAACCTGAGAACAAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCAGC 91989 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| || ||||| ||||| ||||||| | | ||||||||||| || Sbjct 91988 CAGAGTTCGTCCATCTTCTAATTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGG 91929 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| ||||| |||| | ||| ||||| | ||| || || Sbjct 91928 GATACCCTCCTTGTCTTGAATTTTAGCCTTAACATTGTCTATCGTGTCCGAGCTCTCAAC 91869 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || |||||||| || ||||| || || || || || ||||| Sbjct 91868 TTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACAAAAATTTGCAT 91821 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| || || ||||| || | | ||| |||| || | |||||| || |||| Sbjct 91555 TCCTTTTGAATGTTGTAATCCGCAAGAGTCCGTCCATCCTCGAGTTGTTTTCCTGCAAAG 91496 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCG 39646 || ||||| || ||||| | || | ||||||||||| ||||| ||||| | | Sbjct 91495 ATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTCGATTTAACATTG 91436 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| | ||||||| || || || || | ||| || || || || || | ||| |||| Sbjct 91435 TCGATC--GTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTAAGAGTCTTTA 91378 Query 39707 CGAAGATCTGCAT 39719 | ||||||||||| Sbjct 91377 CAAAGATCTGCAT 91365 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| ||||||||||| |||| | ||| |||| |||||||| ||||| ||||| Sbjct 91783 TCCTTTTGAATATTATAATCTGCCAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAA 91724 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | || || |||| || | ||||| || || ||||| |||| | Sbjct 91723 ATCAGCCTTTGTTGGTCCGGTGGAATACCTTCCTTATCTTGAATTTTCGCCTTAACGTTA 91664 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | ||| || || ||||| || |||||||| || || || || || || Sbjct 91663 TCAATAGTGTCCGTGCTCTCAACTTCCAATGTGATTGTTTTTCCAGTCAATGTCTTAACA 91604 Query 39709 AAGATCTGCAT 39719 || || ||||| Sbjct 91603 AATATTTGCAT 91593 >seq66466 Length=51600 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| || | ||| || ||||| || | ||| ||| || || || || ||||| || Sbjct 28608 GCCGCCGCGAAGACGGAGCACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCAGC 28667 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | || |||| ||||| || || || |||| || || | ||||||||| | || Sbjct 28668 TAGGGTTCGGCCATCTTCCAACTGCTTACCAGCAAATATCAACCTCTGCTGATCTGGTGG 28727 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||||| ||||| || || |||| | |||| || ||||| | |||||| Sbjct 28728 GATTCCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCGATA--GTGTCAGAGCTTTCA 28785 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || |||||||| || |||| ||||| || ||||||||||| Sbjct 28786 ACTTCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACAAAGATCTGCAT 28835 >seq53431 Length=29007 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | |||| || || || || || ||||| || Sbjct 13280 CCACCACGGAGACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCT 13221 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| || | ||||| ||| | ||||| | |||||||| |||| || Sbjct 13220 AGAGTTCGACCATCCTCGAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGG 13161 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||| ||||| || ||| || | ||| | | | |||||| | | ||| || Sbjct 13160 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCA-CGTTGTCGATTGTGTCGGAGGATTCGAC 13102 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || || |||||||| | ||||| |||||||||||||| Sbjct 13101 CTCAAGGGTGATGGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCAT 13054 >seq102018 Length=70691 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| || | ||| || || |||| || || | |||||||||| || | |||||| | Sbjct 70515 CATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGCTGATCCGGAGGAATGCCTTCCT 70456 Query 39623 TGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 |||| || ||| |||| | | | |||||||| ||| || || || | ||| | Sbjct 70455 TGTCCTGAATCTTTGCCTTAACATTATCAATTGTGTCTGAGCTCTCAACCTCGAGAGTGA 70396 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || |||||||||||||| ||||||||||| Sbjct 70395 TAGTCTTCCCAGTTAAAGTTTTTACAAAGATCTGCAT 70359 >seq162580 Length=72030 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | |||| ||| || || || || |||||||| ||| Sbjct 31025 CCACCACGGAGACGGAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTATAATCCGCC 31084 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| ||||| || ||||| ||||||| | | ||||||||||| ||| Sbjct 31085 AGAGTTCTTCCATCTTCCAACTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGGGGA 31144 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | || || ||||| | | | || | || | || ||| || || || | || ||| Sbjct 31145 ATACCCTCCTTGTC-CTGAATCTTAGCCTTCACATTGTCAATA--GTATCGGAACTCTCC 31201 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || ||||| || || || || || || || |||||||| Sbjct 31202 ACCTCCAAAGTGATGGTTTTCCCTGTCAACGTCTTCACAAAAATCTGCAT 31251 >seq126260 Length=96127 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || | || ||| || |||||||| | || ||| || || ||||| ||||| || Sbjct 61944 GCCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGC 62003 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | | |||| || | ||||||||| |||| || || | |||||| || | || Sbjct 62004 AAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGG 62063 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTG-TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | || || ||||| || ||| |||| || |||| | || |||| ||| || Sbjct 62064 AATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTCGATG--GTATCTGAGCTCTCA 62121 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | || || || || |||||||||||||| || || ||||||||| Sbjct 62122 ACTTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCATG 62172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346657315052951