Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq90921 131 2e-25 seq25841 123 3e-23 seq42040 118 1e-21 seq3570 118 1e-21 seq154018 111 2e-19 seq73353 107 2e-18 seq138865 98.7 1e-15 seq58966 91.5 2e-13 >seq90921 Length=83348 Score = 131 bits (144), Expect = 2e-25 Identities = 274/399 (69%), Gaps = 12/399 (3%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| | || | || ||||| ||||| | ||||| ||||| || Sbjct 75488 ATCAAATCGCCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 75547 Query 15947 GATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | || | ||||| || ||| || | ||||||||||| || ||||| || ||||| Sbjct 75548 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCCGTCAATAGTTGGTTC 75605 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062 | || ||||||| |||||||||| || | | | | |||| | | |||| || | Sbjct 75606 AGGGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 75663 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 16121 | |||||||| ||||||| || || ||||| || ||||| | | | ||| ||| Sbjct 75664 CAGCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA- 75722 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 ||||| || || || ||| || ||||||||||||||||| ||||| | || | ||| Sbjct 75723 AGATCGCGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA 75782 Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 |||| || || || ||| | |||||| ||||| || || || || || || || Sbjct 75783 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTTTTCCC 75841 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 16279 ||||| || ||| | || || ||||| |||||| Sbjct 75842 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAAT 75880 >seq25841 Length=135519 Score = 123 bits (136), Expect = 3e-23 Identities = 200/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| || ||||| || || |||||||| || || | ||||||||| | Sbjct 101642 AAAACCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 101699 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| || |||| | ||| ||||||| ||||||||||||||||| || || ||| Sbjct 101700 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATG 101759 Query 16092 CATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || ||||| || |||| || | ||||| ||| || | || || || Sbjct 101760 CAAGGCGC--TTTCGACTTCGCCTTCTCGAACAAATCCCT--CACTCTAGAAGCTCCAAC 101815 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||||| ||| ||||| | || | | |||| || || || ||| || ||| Sbjct 101816 ACCAACAAACAACTCAACAAACTCTGATGGTGCACATGAGAAAAATGGTACACCAGCTTC 101875 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||| |||| |||| || | ||| ||||| || ||||| || Sbjct 101876 ACCAGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 101917 >seq42040 Length=32045 Score = 118 bits (130), Expect = 1e-21 Identities = 199/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||| || || |||||||| || || | ||||||||| | Sbjct 5558 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 5615 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| || |||| | ||| | ||||| ||||||||||||||||| || || ||| Sbjct 5616 CCTCCCATTCCTGCACCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATG 5675 Query 16092 CATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || ||||| || |||| || | ||||| ||| || | || || || Sbjct 5676 CAAGGCGC--TTTCGACTTCGCCTTCTCGAACAAATCCCT--CACTCTAGAAGCTCCAAC 5731 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||||| ||| ||||| | || || | |||| || || || ||| || ||| Sbjct 5732 ACCAACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGTACACCAGCTTC 5791 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||| |||| |||| || | ||| ||||| || ||||| || Sbjct 5792 ACCAGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 5833 >seq3570 Length=110709 Score = 118 bits (130), Expect = 1e-21 Identities = 216/309 (70%), Gaps = 8/309 (3%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 ||||||||||| || ||||| || ||||| | || ||||||| |||||||||| || | Sbjct 53315 AAACCATCCATTTCCGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTCCCT--C 53258 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | | |||| | | |||| || || |||||||| ||||||| || || |||| Sbjct 53257 CTCCAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGC 53198 Query 16093 ATGGTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 | || |||||| || ||| ||| ||||| || || || ||| || |||||| Sbjct 53197 AGGGAGCATTTTCCTTGGCCTTCTTGAAA-AGATCACGGACTCGAGAGGCTCCTACACCA 53139 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | || | ||| |||| || || || ||| | |||||| Sbjct 53138 ACAAACATCTCAACAAATTCTGAACCTGAA-ATTGAGAAAAATGGAACACCCGCTTCACC 53080 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||| || || || || ||||| || ||||| || ||| | || || |||| Sbjct 53079 AGCAATTGCCTTTGCTAGCAGGGTCTTCCCAGTACCAGGAGGACCAACAAGAAGAACACC 53020 Query 16271 TCGTGGAAT 16279 | |||||| Sbjct 53019 TTTTGGAAT 53011 >seq154018 Length=23313 Score = 111 bits (122), Expect = 2e-19 Identities = 196/283 (69%), Gaps = 16/283 (6%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| |||||||| ||||| |||||||| || || | |||||||| | Sbjct 12184 AACCCATCCATTTCTGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 12239 Query 16035 ATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 ||| ||| || |||| |||| |||| || ||||||||||||||||| || || Sbjct 12240 --ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACA 12297 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCA 16146 || || || ||||| || || ||||| | ||||| ||| | || |||| Sbjct 12298 ATACAAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCA 12355 Query 16147 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 16206 |||| ||||||| ||| ||||| | || || | |||| || || || ||| | | Sbjct 12356 CACCCACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCT 12415 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 |||| || | |||| || | ||| |||||||| ||||| || Sbjct 12416 CACCAGCTACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGG 12458 >seq73353 Length=20824 Score = 107 bits (118), Expect = 2e-18 Identities = 196/284 (69%), Gaps = 16/284 (6%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| |||||||| || || |||||||| || |||| |||||||| | Sbjct 9218 AAACCCATCCATTTCTGTCAACAGTTGATTAATAGTCTGCTCCCTCTCATCATTTCC--- 9274 Query 16034 CATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 16087 ||| ||| || |||| |||| |||| || ||||||||||||||||| || || Sbjct 9275 ---ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACAC 9331 Query 16088 GATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCC 16145 || || || ||||| || || ||||| | ||||| ||| | || ||| Sbjct 9332 AATACAAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCC 9389 Query 16146 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 16205 ||||| ||||||| ||| ||||| | || || | |||| || || || ||| | Sbjct 9390 ACACCGACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCC 9449 Query 16206 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| || | |||| || | ||| |||||||| || || || Sbjct 9450 TCACCAGCTACTGCTCTAGCCAAAAGTGTCTTACCAGTGCCAGG 9493 >seq138865 Length=42912 Score = 98.7 bits (108), Expect = 1e-15 Identities = 199/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| | || || ||||| | || | |||||| || ||| | ||| || || || Sbjct 26080 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTGGCAGC 26139 Query 15947 GATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 ||||||| | || |||||| | ||||||||||| || || | ||| |||||| Sbjct 26140 AATGACAATGACTCCAGTGTTTCC--AGTGAAACCATCCATTTCAGTGAGAAGTTGGTTA 26197 Query 16005 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 16062 | || || || | ||||||||| | | | || ||||| | | |||| | || | Sbjct 26198 AGTGTCTGCTCTCTTTCATCATTTCCACCGCCAAT--ACCAGTTCCTCTTTGCCTCCCAA 26255 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGA 16122 | ||||||||||||||||| ||||| | || ||| |||||| || | || | Sbjct 26256 CAGCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTCCTTTGCCTTGTTGAATA 26315 Query 16123 GATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAA 16168 |||| || || || | || |||||||||||||||||||| ||||| Sbjct 26316 AGTCCC-TA-ACTCTAGAAGCTCCCACACCAACAAACATCTCAACAAA 26361 >seq58966 Length=79355 Score = 91.5 bits (100), Expect = 2e-13 Identities = 195/286 (68%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| | || || ||||| | || | |||||| || ||| | ||| || || || Sbjct 42408 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 42467 Query 15947 GATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 ||||||| | || |||||| | |||||||||||| || || | ||| |||||| Sbjct 42468 AATGACAATGACTCCAGTGTTTCC--AGTAAAACCATCCATTTCAGTGAGAAGTTGGTTA 42525 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 16064 | || || || | ||||||||| | | ||||| | | |||| | || || Sbjct 42526 AGTGTCTGCTCTCTTTCATCATTTCCACCACCAATACCAGTTCCTCTTTGCCTCCCAACA 42585 Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124 ||||||||||||||||| ||||| | || ||| ||||| || | || | Sbjct 42586 GCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTGCTTTGCCTTGTTGAATAAG 42645 Query 16125 TCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAA 16168 |||| || || || | || |||||||||||||||||||| || || Sbjct 42646 TCCC-TA-ACTCTAGAAGCTCCCACACCAACAAACATCTCAACGAA 42689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619436924417840