Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq154018 84.2 3e-11 seq157693 82.4 9e-11 seq131383 82.4 9e-11 >seq154018 Length=23313 Score = 84.2 bits (92), Expect = 3e-11 Identities = 192/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG-AGG 11650 ||| || ||||||||||| | ||||| || || ||||| || | |||||| || | Sbjct 12183 GAACCCATCCATTTCTGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCCACC 12242 Query 11651 GCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710 | | | |||||| | | | | || ||||| ||||||||||| || || || |||| Sbjct 12243 TCCAAGC-CCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACAATAC 12301 Query 11711 ACGGTTGGTTGGCACGT-GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769 | || | || || | |||| || || | || | ||| | ||||| ||||| Sbjct 12302 AAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCACACCC 12360 Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACC 11828 || |||| |||||| || | || || | ||| ||| | || || ||| | |||||| Sbjct 12361 ACAAACAACTCAACAAACTCTGATGCTGCACA-TGAGAAAAATGGCACACCTGCCTCACC 12419 Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTG 11869 ||| | |||| ||| | || |||||||| |||||||||| Sbjct 12420 AGCTACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGGTG 12460 >seq157693 Length=21216 Score = 82.4 bits (90), Expect = 9e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| | ||||| | | |||||| ||||||||||||||| Sbjct 14542 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 14483 Query 136777 GGGAACAGCTTTTAGA-TATATTTT 136800 |||| || ||||| || | |||||| Sbjct 14482 GGGACCACCTTTTTGAGTGTATTTT 14458 >seq131383 Length=46135 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| | ||||| | | |||||| ||||||||||||||| Sbjct 15619 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 15560 Query 136777 GGGAACAGCTTTT 136789 |||| |||||||| Sbjct 15559 GGGACCAGCTTTT 15547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587737331936600