Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq90921 132 6e-26 seq25841 122 1e-22 seq3570 120 4e-22 seq42040 116 4e-21 seq138865 113 5e-20 seq73353 113 5e-20 seq154018 107 2e-18 seq58966 105 8e-18 seq65957 102 1e-16 seq119769 93.3 5e-14 seq159053 91.5 2e-13 seq15852 86.0 7e-12 >seq90921 Length=83348 Score = 132 bits (146), Expect = 6e-26 Identities = 254/368 (69%), Gaps = 10/368 (3%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 75488 ATCAAATCGCCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 75547 Query 9254 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | || | ||||| || ||| || | ||||||||||| || ||||| |||||||| Sbjct 75548 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCCGTCAATAGTTGGTTC 75605 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | || ||||||| |||||||||| || | | | | |||| | | |||| || | Sbjct 75606 AGGGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 75663 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | |||||||| ||||||| || ||||| || || |||||| ||| | | || | Sbjct 75664 CAGCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAAA 75723 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 ||||||| || | ||| || ||||||||||||||||| ||||| | || | ||| Sbjct 75724 GATCGCGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA- 75782 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 |||| || || || ||| | |||||| ||||| || || || || || || || Sbjct 75783 ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTTTTCCCA 75842 Query 9549 GTACCTGG 9556 ||||| || Sbjct 75843 GTACCAGG 75850 >seq25841 Length=135519 Score = 122 bits (134), Expect = 1e-22 Identities = 197/279 (71%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 |||||||||||| || ||||| ||||| |||||||| || || | ||||||||| | Sbjct 101642 AAAACCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCC--A 101699 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| || |||| | ||| ||||||| ||||||||||||||||| || ||||| Sbjct 101700 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATG 101759 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | || | || || | ||| | || || || || ||||| Sbjct 101760 CAAGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTCCAACACC 101818 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 |||||||| ||| ||||| | || | | |||| || || || ||| || |||||| Sbjct 101819 AACAAACAACTCAACAAACTCTGATGGTGCACATGAGAAAAATGGTACACCAGCTTCACC 101878 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| |||| || | ||| ||||| || ||||| || Sbjct 101879 AGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 101917 >seq3570 Length=110709 Score = 120 bits (132), Expect = 4e-22 Identities = 196/278 (71%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 ||||||||||| || ||||| |||||||| | || ||||||| |||||||||| || | Sbjct 53315 AAACCATCCATTTCCGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTCCCT--C 53258 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | |||| | | |||| || || |||||||| ||||||| || ||||| | Sbjct 53257 CTCCAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGC 53198 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | || |||||| ||| | | || ||||| || || | ||| || ||||||| Sbjct 53197 AGGGAGCATTTTCCTTGGCCTTCTTGAAAAGATCACGGACTCGAGAGGCTCCTACACCAA 53138 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9518 |||||||||| ||||| | || | ||| |||| || || || ||| | |||||| Sbjct 53137 CAAACATCTCAACAAATTCTGAACCTGAA-ATTGAGAAAAATGGAACACCCGCTTCACCA 53079 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||||| || || || || ||||| || ||||| || Sbjct 53078 GCAATTGCCTTTGCTAGCAGGGTCTTCCCAGTACCAGG 53041 >seq42040 Length=32045 Score = 116 bits (128), Expect = 4e-21 Identities = 196/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || ||||| ||||| |||||||| || || | ||||||||| | Sbjct 5558 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 5615 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| || |||| | ||| | ||||| ||||||||||||||||| || ||||| Sbjct 5616 CCTCCCATTCCTGCACCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATG 5675 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | || | || || | ||| | || || || || ||||| Sbjct 5676 CAAGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTCCAACACC 5734 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 |||||||| ||| ||||| | || || | |||| || || || ||| || |||||| Sbjct 5735 AACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGTACACCAGCTTCACC 5794 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| |||| || | ||| ||||| || ||||| || Sbjct 5795 AGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 5833 >seq138865 Length=42912 Score = 113 bits (124), Expect = 5e-20 Identities = 199/286 (70%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | || || ||||| | || | |||||| || ||| | ||| || || || Sbjct 26080 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTGGCAGC 26139 Query 9254 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 ||||||| | || |||||| | ||||||||||| || || | |||||||||| Sbjct 26140 AATGACAATGACTCCAGTGTTTCC--AGTGAAACCATCCATTTCAGTGAGAAGTTGGTTA 26197 Query 9312 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9369 | || || || | ||||||||| | | | || ||||| | | |||| | || | Sbjct 26198 AGTGTCTGCTCTCTTTCATCATTTCCACCGCCAAT--ACCAGTTCCTCTTTGCCTCCCAA 26255 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | ||||||||||||||||| ||||| | ||| ||| |||||| || | | || | Sbjct 26256 CAGCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTCCTTTGCCTTGTTGAATA 26315 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 || | ||| || || |||||||||||||||||||| ||||| Sbjct 26316 AGTCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAACAAA 26361 >seq73353 Length=20824 Score = 113 bits (124), Expect = 5e-20 Identities = 197/283 (70%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| |||||||| ||||| |||||||| || |||| |||||||| | Sbjct 9218 AAACCCATCCATTTCTGTCAACAGTTGATTAATAGTCTGCTCCCTCTCATCATTTCC--- 9274 Query 9341 CATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9394 ||| ||| || |||| |||| |||| || ||||||||||||||||| || || Sbjct 9275 ---ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACAC 9331 Query 9395 AATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 |||||| || | ||| | || | ||||| | ||| | || || || |||| Sbjct 9332 AATACAAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCA 9390 Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9513 |||| ||||||| ||| ||||| | || || | |||| || || || ||| | | Sbjct 9391 CACCGACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCT 9450 Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| || | |||| || | ||| |||||||| || || || Sbjct 9451 CACCAGCTACTGCTCTAGCCAAAAGTGTCTTACCAGTGCCAGG 9493 >seq154018 Length=23313 Score = 107 bits (118), Expect = 2e-18 Identities = 195/282 (69%), Gaps = 14/282 (5%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| |||||||| || || |||||||| || || | |||||||| | Sbjct 12184 AACCCATCCATTTCTGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 12239 Query 9342 ATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 ||| ||| || |||| |||| |||| || ||||||||||||||||| || ||| Sbjct 12240 --ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACA 12297 Query 9396 ATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 ||||| || | ||| | || | ||||| | ||| | || || || ||||| Sbjct 12298 ATACAAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCAC 12356 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514 ||| ||||||| ||| ||||| | || || | |||| || || || ||| | || Sbjct 12357 ACCCACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCTC 12416 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| || | |||| || | ||| |||||||| ||||| || Sbjct 12417 ACCAGCTACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGG 12458 >seq58966 Length=79355 Score = 105 bits (116), Expect = 8e-18 Identities = 195/284 (69%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | || || ||||| | || | |||||| || ||| | ||| || || || Sbjct 42408 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 42467 Query 9254 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 ||||||| | || |||||| | |||||||||||| || || | |||||||||| Sbjct 42468 AATGACAATGACTCCAGTGTTTCC--AGTAAAACCATCCATTTCAGTGAGAAGTTGGTTA 42525 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9371 | || || || | ||||||||| | | ||||| | | |||| | || || Sbjct 42526 AGTGTCTGCTCTCTTTCATCATTTCCACCACCAATACCAGTTCCTCTTTGCCTCCCAACA 42585 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 ||||||||||||||||| ||||| | ||| ||| ||||| || | | || | Sbjct 42586 GCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTGCTTTGCCTTGTTGAATAAG 42645 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 || | ||| || || |||||||||||||||||||| || || Sbjct 42646 TCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAACGAA 42689 >seq65957 Length=165596 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || |||||||| || |||||||| || | ||||| | ||| ||| ||||| | ||| Sbjct 147941 TGAGGTCTTGGAGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGA 148000 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | ||||||| | |||||| ||||| || ||| |||||| || | | Sbjct 148001 GACATCAAATGATATGTCTTGATGACAGATTCAATATCATCCTTGTGGATCCCAACAGAT 148060 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| | ||||| ||| || |||| | | | || | || | || | || || Sbjct 148061 ACTCTCATCAGCATGTGTTGTGGCCTTTCTACAACTTTACCCT-GAATCTTTAAGAGGTA 148119 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 | ||||||||||||||| |||||||||| || ||||| |||| Sbjct 148120 AGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTC 148164 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||| || || ||||| || | |||||| ||||| || ||| | | |||| Sbjct 146584 ACATATCTTGGCAGAGCAATTGAGGCAAGATTGCATACAGCAGTTTCAGCTGGACTTGTG 146643 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 || || | ||| || ||||||||||| || ||| || || || | ||||| |||||| Sbjct 146644 TATTCAATAATCTCAGTACACAAGTTAGACGACTTGATAGTGCCAAGATTCTGCTGGTTA 146703 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| | ||||||| ||||| Sbjct 146704 CTTTTTCTATTGCACGTATCCT 146725 >seq119769 Length=87979 Score = 93.3 bits (102), Expect = 5e-14 Identities = 189/276 (68%), Gaps = 11/276 (4%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||| || || | ||||| | || || |||||| || || Sbjct 78873 GCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCA 78814 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | |||||||| || ||||| | ||||| ||||| || ||||| || ||| Sbjct 78813 GGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATA 78754 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAG-CGAGACTTTGTGTCAAA 117452 || |||||||| ||||| |||| | ||||| || || | || || ||| | Sbjct 78753 CCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACC----GTCGAT 78698 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||| | |||||| |||||||||||||||| ||| || | ||| | | || || Sbjct 78697 CCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAA 78638 Query 117513 TAA-CTGCTTCTTT--TCAGATCCATCCTTAATGTA 117545 ||| |||||| ||| ||||| ||||| ||||| Sbjct 78637 TAATCTGCTTTTTTCGTCAGA---GTCCTTGATGTA 78605 >seq159053 Length=93502 Score = 91.5 bits (100), Expect = 2e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 136169 TATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGT 136228 ||| |||||||||| | |||||||||||||||||||||| |||| ||||||||||| ||| Sbjct 27685 TATGGTGTAGTGGTTAGCACTTTGGACTTTGAATCCAACGACCCGGGTTCAAATCCCGGT 27626 Query 136229 AGGAGCTT 136236 |||| ||| Sbjct 27625 AGGACCTT 27618 >seq15852 Length=16152 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||| || || ||||| || | |||||| ||||| || ||| | |||| Sbjct 5638 ACATATCTTGGTAGAGCAATTGAAGCAAGATTGCACACAGCAGTTTCAGTTGGACTTGTG 5579 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 ||||| | ||| || ||||||||||| || ||| || || || | ||||| |||||| Sbjct 5578 TACTCAATAATCTCAGTACACAAGTTAGACGACTTGATAGTGCCAAGATTCTGCTGGTTA 5519 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| | ||||| | ||||| Sbjct 5518 CTTTTTCTATTGCAAGTATCCT 5497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588740018754280