Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq119769 158 1e-33 seq156841 141 1e-28 seq121296 104 3e-17 seq65957 100 3e-16 seq15852 100 3e-16 >seq119769 Length=87979 Score = 158 bits (174), Expect = 1e-33 Identities = 561/872 (64%), Gaps = 5/872 (1%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||||| || |||||||||||||| || || | ||| || Sbjct 79168 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 79109 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||||| ||||| | |||| |||| || | | || || | | Sbjct 79108 CTCCATCCAATCAAACGGATTCTGAGCATTGTATAACTTATCATAACCCAAAGCATCCAA 79049 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | |||||| || || |||| ||| ||| || |||||| ||| | ||||||||| | | Sbjct 79048 CAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG 78989 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | ||| || || || | ||| || |||||| | || || |||| | ||| Sbjct 78988 CGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 78929 Query 18909 AGATACAACTCTATCTTCATTAGGAGG-GTATAGAAGATGTTTAAACATCAAACATGCAA 18967 ||||| || ||| || | || || | | || | |||||| |||| Sbjct 78928 TCCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAA-AGCAAACAAGCAA 78870 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 ||||||| || | || ||||| || ||||| || || || || ||||| ||||||| Sbjct 78869 AATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCAGGCA 78810 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 | | || | ||||||||||||||||||| | || |||||| || || ||||||| Sbjct 78809 TTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCTT 78750 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || ||||| ||||| | | |||| || | | || | | ||||| Sbjct 78749 CCACACAAGCAAATGCAACCAAAC--GCTCCGCAAAT-GTTTCGGAACCGTCGATCCAAC 78693 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 |||||||| | |||||||| | ||||| || || ||||| | | |||| Sbjct 78692 GTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATC 78633 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | || || | || || | || | |||| | | ||||||||| || |||| Sbjct 78632 TGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGTACATCTCGGAAT 78573 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | || ||||| || || || || || ||||| ||| | || || | | || |||| Sbjct 78572 GGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCCGCAACTTGGACTT 78513 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 | | || ||| || | | ||||| ||| || || || || || ||||| | Sbjct 78512 CTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGG 78453 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATAT 19447 | | ||||| | || ||||| |||| | | ||||| || | ||| | | ||| Sbjct 78452 CAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAGTGACGGGTAT 78393 Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 || ||||||||| ||||| ||| | ||||| ||||| || |||||||| ||||| | Sbjct 78392 CTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTT 78333 Query 19508 TCCATATATCACGATATTGTATAGGAAATATA 19539 ||| || | | ||||| || || || ||| Sbjct 78332 CCCAAATTTGTGGGTATTGAATTGGGAACATA 78301 >seq156841 Length=49269 Score = 141 bits (156), Expect = 1e-28 Identities = 557/871 (64%), Gaps = 5/871 (1%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || ||||| || ||||||| || |||||||||||||| || || | ||| || Sbjct 12613 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 12672 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||||| ||||| | |||| || | || | | || || | | Sbjct 12673 TCCATCCAATCAAACGGATTCTGCGCATTGTACAGCTTATCATAACCCAAAGCATCCAAC 12732 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || || |||| ||| ||| || |||||| ||| | ||||||||| | | Sbjct 12733 AATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 12792 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | ||| || || || | ||| || |||||| | || || |||| | ||| Sbjct 12793 GCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 12852 Query 18910 GATACAACTCTATCTTCATTAGGAGG-GTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 ||||| || ||| || | || || | | || | |||||| ||||| Sbjct 12853 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAA-AGCAAACAAGCAAA 12911 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||||| || | || ||||| || || || || || || || ||||| |||||||| Sbjct 12912 ATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGCAT 12971 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 | || | ||||||||||||||||||| | || |||||| || || |||||||| Sbjct 12972 TAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCTTC 13031 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 || ||||| ||||| | | |||| || | | || | || ||||| Sbjct 13032 CACACAAGCAAAGGCAACCAAAC--GCTCCGCAAAT-GTTTCGGAACCATCGATCCAACG 13088 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || ||||| | |||||||| | ||||| || || ||||| | | |||| Sbjct 13089 TAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCT 13148 Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268 | || || | || || | || | |||| | | ||||||||| || || || Sbjct 13149 GCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTG 13208 Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 || ||||| || || || || || ||||| ||| | || || | | || ||||| Sbjct 13209 GATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGGACTTC 13268 Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388 | || ||| || | | ||||| ||| || || || || || ||||| || Sbjct 13269 TTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGC 13328 Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATC 19448 | || || | || ||||| ||||| | | ||||| || | ||| | | |||| Sbjct 13329 AAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGGTATC 13388 Query 19449 TTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTT 19508 ||||||||| ||||||||| | ||||| ||||| || |||||||| ||||| | Sbjct 13389 GGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTC 13448 Query 19509 CCATATATCACGATATTGTATAGGAAATATA 19539 ||| || | | ||||| || || || ||| Sbjct 13449 CCAAATTTGTGGGTATTGAATTGGGAACATA 13479 >seq121296 Length=44911 Score = 104 bits (114), Expect = 3e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| | ||||||||||||||||||||||||| | |||||| | || | ||| | Sbjct 5471 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 5412 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 ||| |||| || |||| || ||||| | ||| ||||| || | |||||| | ||| | Sbjct 5411 ATACGTTTTGATGGCAGATTCAATATCATCCTTG-TGTATCCCAACAGATACTCTCATCA 5353 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | || || ||||| |||| ||| | || || || || || || | || | Sbjct 5352 GCATGTGGTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 5293 Query 48778 ATGTTTTAAAACCAAAATA 48796 | ||||| ||||||||||| Sbjct 5292 AGGTTTTGAAACCAAAATA 5274 >seq65957 Length=165596 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| | ||||||||||||||||||||||||| | |||||| | || | ||| | Sbjct 147952 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 148011 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 |||||| | || ||||| || ||||| | ||| || || || | |||||| | ||| | Sbjct 148012 ATATGTCTTGATGACAGATTCAATATCATCCTTG-TGGATCCCAACAGATACTCTCATCA 148070 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | ||| || ||||| |||| ||| | || || || || || || | || | Sbjct 148071 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 148130 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 ||||| |||||||| || | || |||||| | |||| Sbjct 148131 GGGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCAT 148172 >seq15852 Length=16152 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| | ||||||||||||||||||||||||| | |||||| | || | ||| | Sbjct 4243 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 4184 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 |||||||| || |||| || ||||| | ||| ||||| || | |||||| | ||| | Sbjct 4183 ATATGTTTTGATGGCAGATTCAATATCATCCTTG-TGTATCCCAACAGATACTCTCATCA 4125 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | ||| || ||||| |||| ||| || || || || || || | || | Sbjct 4124 GCATGTGTTGTGGCCTTTCTACAACTTTACCCCGAATCTTTAAGAGGTAAGACCTCTCAA 4065 Query 48778 ATGTTTTAAAACCAAAATA 48796 ||||| |||||||| || Sbjct 4064 GGGTTTTGAAACCAAAGTA 4046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560926636009080