Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq119769 125 8e-24 seq156841 107 2e-18 >seq119769 Length=87979 Score = 125 bits (138), Expect = 8e-24 Identities = 366/561 (65%), Gaps = 11/561 (2%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| ||||||||||| || |||||||| || || ||||| || || || |||||| Sbjct 78879 AAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTT 78820 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAA 37291 ||||| |||||||| || | ||||| | ||| ||||| || || ||| | ||||| || Sbjct 78819 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCA-CAGAAGCTTCCAGAGAA 78761 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT---GAACTATA 37348 ||||||||||| || |||||||| || | ||| | || ||| |||| Sbjct 78760 AAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAAC---- 78705 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 | ||||| | || ||| | ||||| | |||||| || || |||| Sbjct 78704 --CGTCGATCCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAAC 78647 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 ||| || | | ||||||| ||| || | || |||| || | || | ||| Sbjct 78646 TGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACT 78587 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||| || || || || |||||||| || || || || || || ||| | || || Sbjct 78586 GTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTC 78527 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 | | ||| || || || | ||||| |||| |||||| ||| || || || Sbjct 78526 CGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGA 78467 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTT 37648 || || || || ||||| |||| | || ||||| ||||| | | || ||| Sbjct 78466 GGCGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTC 78407 Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGC 37708 ||| | | ||||| |||||||| ||||| ||| | ||||| ||| || || || Sbjct 78406 CCAGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGC 78347 Query 37709 ACGTTTATACATCGTCCAAAT 37729 ||| ||||| |||||| Sbjct 78346 TTTTTTGTACATTTCCCAAAT 78326 >seq156841 Length=49269 Score = 107 bits (118), Expect = 2e-18 Identities = 362/561 (65%), Gaps = 11/561 (2%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| ||||||||||| || |||||||| || || || || || || || || ||| Sbjct 12901 AAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTT 12960 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291 ||||| |||||||| || | ||||| | ||| ||||| || || ||| |||||| || Sbjct 12961 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGC-ACAGAAGCTTCCAGAGAA 13019 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT---GAACTATA 37348 ||||||||||| || ||||| || || | ||| | || ||| |||| Sbjct 13020 AAAAATACCTTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGAAC---- 13075 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 || ||||| | | ||| | ||||| | |||||| || || |||| Sbjct 13076 --CATCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAAC 13133 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 ||| || | | ||||||| ||| || | || || | || | || | ||| Sbjct 13134 TGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACT 13193 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||| || ||||| || |||||||| || || || || || || ||| | || || Sbjct 13194 GTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTC 13253 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 | | ||| || || || | ||||| |||| |||||| ||| || || || Sbjct 13254 GGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGA 13313 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTT 37648 || || || || ||||| || | | || ||||| |||||| | | || ||| Sbjct 13314 GGCGGCGAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTC 13373 Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGC 37708 ||| | | |||| |||||||| ||||| ||| | ||||| ||| || || || Sbjct 13374 CCAGTGACGGGTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGC 13433 Query 37709 ACGTTTATACATCGTCCAAAT 37729 ||| ||||| |||||| Sbjct 13434 TTTTTTGTACATTTCCCAAAT 13454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591071105941880