Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq93251 96.9 8e-15 seq57366 96.9 8e-15 >seq93251 Length=114794 Score = 96.9 bits (106), Expect = 8e-15 Identities = 178/255 (70%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGA 150365 || ||| ||||||||||| | |||||| | || ||| || || || |||||| || Sbjct 4507 AGCAGGAAAACTTGATCCTGTGATTGGTAGGGATGAAGAAATTCGAAGAG-TAATTCGGA 4449 Query 150366 TTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423 || | || | | || || || ||| ||||| ||| ||||||| || ||||||||||| Sbjct 4448 TTTTATCGAGGAGGACAAAGAATAATCCGGTGC-TTA-TTGGTGAGCCTGGTGTTGGTAA 4391 Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTAT 150483 |||| | | ||||| || |||||||| | || | | || ||||| || | | | Sbjct 4390 AACAGCAGTAGTTGAAGGGCTAGCACAAAGGATTGTTCGAGGAGATGTCCCGAGTAATTT 4331 Query 150484 GAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCG 150543 | |||||| | || | | ||| | ||||| ||||| | |||||| | || ||| | Sbjct 4330 GGCTGATGTTAGACTTATAGCATTGGACATGGGAGCATTAATTGCTGGAGCAAAATATAG 4271 Query 150544 TGGTGAATTCGAAGA 150558 |||||||| ||||| Sbjct 4270 AGGTGAATTTGAAGA 4256 >seq57366 Length=15119 Score = 96.9 bits (106), Expect = 8e-15 Identities = 311/473 (66%), Gaps = 16/473 (3%) Strand=Plus/Plus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGA 150365 || ||| ||||||||||| | || ||| | || ||| || || || |||||| || Sbjct 11331 AGCAGGAAAACTTGATCCTGTGATCGGTAGGGATGAAGAAATTCGAAGAG-TAATTCGGA 11389 Query 150366 TTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423 || | || | | || || || ||| ||||| ||| ||||||| || ||||||||||| Sbjct 11390 TTTTGTCGAGGAGGACGAAGAATAATCCGGTGC-TTA-TTGGTGAGCCTGGTGTTGGTAA 11447 Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTAT 150483 |||| | | ||||| || |||||||| | || | | || ||||| || | | | Sbjct 11448 AACAGCAGTAGTTGAAGGGCTAGCACAAAGGATTGTTCGAGGCGATGTCCCGAGTAATTT 11507 Query 150484 GAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCG 150543 | |||||| | || | | ||| ||||||| ||||| | |||||| | || ||| | Sbjct 11508 GTCTGATGTTAGACTTATAGCATTGGATATGGGGGCATTAATTGCTGGAGCAAAATATAG 11567 Query 150544 TGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATG-- 150599 |||||||| ||||| | || || || || || | ||| | ||||| || | Sbjct 11568 AGGTGAATTTGAAGAGAGGTTGAAGGCA--GTGTTAAAGGAAGTGGAAGAAGCAGAAGGG 11625 Query 150600 -ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGC 150658 | || || || || || ||||| || || || | ||||||||| |||| | Sbjct 11626 AAAGTGATCCTTTTTATTGATGAGATTCACTTGGTTTTAGGTGCTGGTAGGACT---GAA 11682 Query 150659 GGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTC 150718 || ||| ||||| |||| |||| || || || || | || || | | | Sbjct 11683 GGGTCTATGGATGCTGCCAATTTGTTTAAGCCAATGCTTGCTAGGGGCCAATTAAGGTGC 11742 Query 150719 ATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGC 150771 || ||||||||||| ||| || ||| | || | | ||||| ||||| || Sbjct 11743 ATTGGTGCAACAACTCTCGAGGAGTATAGGAAGTATGTCGAAAAGGATGCTGC 11795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1145116579899006