Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq142367 96.9 3e-15 seq162580 89.7 4e-13 seq66466 89.7 4e-13 seq86621 87.8 2e-12 seq129139 86.0 5e-12 seq118583 86.0 5e-12 >seq142367 Length=42869 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| ||||| || ||||||||||| ||| || || Sbjct 1478 AATGCAAATCTTTGTTAAAACCTTAACTGGGAAAACCATTACATTGGAAGTTGAGAGCTC 1419 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || | ||| |||||| || || || || | || ||| || Sbjct 1418 AGACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCA 1359 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || || || || || || ||||| |||||| | ||| |||| |||||||| Sbjct 1358 GCAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACGCTGGCTGATTATAA 1299 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || || |||||||| || ||| | || | ||||| |||| || || Sbjct 1298 CATCCAGAAGGAATCTACCCTTCACCTTGTTCTCAGATTGAGAGGTGGCAT 1248 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| |||||||| |||||||| || ||| || || Sbjct 794 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 735 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| ||| | | | || | ||| || || || || ||||| | || ||| || Sbjct 734 AGACACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCACCAGACCA 675 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||||||||| || || || ||||| ||| || || | || ||||| || Sbjct 674 GCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCAGATTACAA 615 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 ||||| || || |||||||| || Sbjct 614 TATTCAGAAGGAGTCTACTCTCCA 591 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| ||||| || ||||||||||| ||| || ||| Sbjct 2389 ATGCAGATCTTTGTTAAAACCTTAACTGGGAAAACCATTACATTGGAAGTTGAGAGCTCA 2330 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| || || || || | || ||| || Sbjct 2329 GACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCAG 2270 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || || || || || ||||| |||||| | ||| |||| ||||||||| Sbjct 2269 CAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACGCTGGCTGATTATAAC 2210 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || |||||||| || ||| | || | ||||| |||| || || Sbjct 2209 ATCCAGAAGGAATCTACCCTTCACCTTGTTCTCAGATTGAGAGGTGGCAT 2160 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || ||||| || ||||| || || ||| || || Sbjct 1934 AATGCAAATCTTTGTTAAGACCTTAACCGGGAAAACAATCACATTGGAAGTTGAGAGCTC 1875 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | | | ||| ||||| ||||||||||| | || ||||| Sbjct 1874 GGACACGATTGACAACGTTAAGGCGAAAATACAAGACAAAGAGGGTATCCCACCGGATCA 1815 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || || ||||| || || |||||||||||| ||| | || |||||||| Sbjct 1814 GCAGAGGCTGATATTTGCAGGGAAGCAATTGGAAGATGGGCGTACTCTCGCAGATTATAA 1755 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||||| || || ||||| ||| Sbjct 1754 TATTCAAAAGGAGTCAACTCTCCAC 1730 >seq162580 Length=72030 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || |||||||| || || ||| ||| Sbjct 31251 ATGCAGATTTTTGTGAAGACGTTGACAGGGAAAACCATCACTTTGGAGGTGGAGAGTTCC 31192 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| || || ||||| ||||| | ||| ||||| Sbjct 31191 GATACTATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 31132 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || ||||| || || || ||||||||| | |||| |||| ||||||||| Sbjct 31131 CAGAGGCTGATTTTTGCTGGGAAGCAGTTGGAAGATGGAAGAACTCTGGCGGATTATAAC 31072 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || || || || ||||||||| Sbjct 31071 ATCCAGAAGGAGTCGACTCTGCAC 31048 >seq66466 Length=51600 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/205 (71%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || ||||| || |||||||| || || |||| ||| Sbjct 28379 ATGCAGATTTTTGTGAAGACGTTAACCGGGAAAACCATCACTTTGGAGGTGGAAAGTTCT 28320 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || || || | || ||||| ||||| | ||| ||||| Sbjct 28319 GATACTATTGACAATGTGAAAGCTAAGATTCAG-GACAAGGAGGGTATCCCCCG-GATCA 28262 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || ||||||||||| || |||||||||||| ||| | || ||||| || Sbjct 28261 GCAGAGGCTGATCTTTGCGGGAAAGCAATTGGAAGATGGACGAACCCTCGCTGATTACAA 28202 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||| || || || || |||||| Sbjct 28201 CATTCAGAAGGAGTCCACCCTGCAC 28177 >seq86621 Length=111109 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || ||||| || ||||| || || ||| || || Sbjct 91820 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 91879 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | || | ||| ||||| ||||| ||||| | || ||||| Sbjct 91880 GGACACGATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCGGATCA 91939 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || || ||||| || || ||||| |||||| |||| |||| |||||||| Sbjct 91940 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATAA 91999 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || || ||||| || || ||| | || | || || |||| || || Sbjct 92000 CATCCAGAAGGAATCCACCCTTCACCTTGTTCTCAGGTTGAGAGGTGGCAT 92050 >seq129139 Length=45594 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| |||| || |||||||| || ||| || || Sbjct 30652 ATGCAGATCTTTGTTAAAACCATAACTGGAAAAACCATCACACTGGAAGTTCAAAGCTCG 30711 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || | ||| ||||| ||||| ||||| | || ||||| Sbjct 30712 GACACGATAGATAATGTTAAGGCGAAAATTCAAGACAAGGAGGGTATCCCGCCGGATCAG 30771 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || ||||| || ||||||||||||||| ||| | || ||||||||| Sbjct 30772 CAGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGCGTACTCTCGCAGATTATAAC 30831 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| || || || || ||| | || | || || | || ||||| Sbjct 30832 ATTCAAAAGGAGTCAACCCTCCACCTAGTTCTCAGGCTAAGGGGTGGGAT 30881 >seq118583 Length=73751 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| |||||||| || ||||| || ||| || || Sbjct 38666 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAGACCATCACATTGGAAGTTGAGAGCTC 38607 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| ||| | | | || | ||| || || || ||||| || | || || || Sbjct 38606 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCACCGGACCA 38547 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| ||||| ||| || || | || || ||||| Sbjct 38546 GCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTTGCTGACTATAA 38487 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||||||||| || || || || ||| Sbjct 38486 CATTCAAAAGGAGTCAACACTCCAC 38462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 ||| || |||||||| || ||||| || ||||||||||||||| | ||| | || || Sbjct 39008 AGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGA 38949 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCAC 28757 |||||| |||||||| |||||||| || ||| Sbjct 38948 TTATAATATTCAAAAGGAATCTACCCTTCAC 38918 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || ||||| || |||||||| || ||| || || Sbjct 38894 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACCATCACATTGGAAGTTGAGAGCTC 38835 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| ||| | | | || | ||| || || || ||||| || | || || || Sbjct 38834 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCGCCGGACCA 38775 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| ||||| ||| || || | || || ||||| Sbjct 38774 GCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTTGCTGACTATAA 38715 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||||||||| || || || || ||| Sbjct 38714 CATTCAAAAGGAGTCAACACTCCAC 38690 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || ||||| || ||||| || || || || || Sbjct 39350 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAGGTTGAGAGCTC 39291 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | || | ||| ||||| ||||| ||||| | || ||||| Sbjct 39290 GGACACGATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCTGATCA 39231 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| | || ||||| || || ||||| |||||| | |||| |||| |||||||| Sbjct 39230 GCAGAGGTTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAA 39171 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||| || || ||||| || || ||| Sbjct 39170 CATCCAGAAGGAATCCACCCTTCAC 39146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424532503070613