Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq138865 125 9e-24 seq90921 111 2e-19 seq58966 111 2e-19 seq65957 102 1e-16 seq154018 98.7 1e-15 seq119769 93.3 5e-14 seq73353 91.5 2e-13 seq3570 89.7 6e-13 >seq138865 Length=42912 Score = 125 bits (138), Expect = 9e-24 Identities = 249/366 (68%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || ||||| | || || || || || || ||| || | || |||||| Sbjct 26442 CCAGGGACAGGGAAGACATTGCTAGCTAAGGCGATTGCCGGAGAAGCAGAGGTTCCATTC 26383 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||||| || | ||||| |||||||||||||||||||| || || ||| Sbjct 26382 TTATCTCTCTCTGGTTCAGAGTTTGTTGAGATGTTTGTTGGTGTGGGAGCTTCTAGAGTT 26323 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | || | || | | || |||||| ||| ||| | ||||| |||||||||||| Sbjct 26322 AGGGACTTATTCAACAAGGCAAAGGAAAATTCACCTTGTTTAGTCTTTATTGATGAGATT 26263 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 ||||| || || | |||| | | ||||| | | |||||| || ||||| || Sbjct 26262 GATGCTGTTGGGAGGCAAAGAGGAACTGGTATTGGCGGTGGAAATGATGAAAGAGAGCAG 26203 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC---AATGAGACTGGCATTGTG 175611 ||| |||| ||||| ||||| || |||||||| ||| || || | ||||| | | Sbjct 26202 ACACTTAACCAACTTCTCACTGAAATGGATGG-TTTCACTGGAA--ACACTGGAGTCATT 26146 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671 || ||||| ||||||||| | || || |||||| | || | ||||| || || | Sbjct 26145 GTCATTGCTGCCACTAATAGGCCTGAAATTCTTGATCAAGCTTTGCTTCGACCTGGAAGA 26086 Query 175672 TTTGAT 175677 |||||| Sbjct 26085 TTTGAT 26080 >seq90921 Length=83348 Score = 111 bits (122), Expect = 2e-19 Identities = 281/420 (67%), Gaps = 8/420 (2%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAG-ATCCC 175289 ||| | || || ||| | ||| | |||||||| | || | ||||| | | | || || Sbjct 75934 GAGGTAGTAGAATTTTTGAAGAAGCCCGAGAGGT-TTACCGCAGTGGGGGCTCGTATTCC 75876 Query 175290 CCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCAT 175349 ||| | ||||| | ||| || ||||| || || ||||| || || || || Sbjct 75875 AAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCCTGCTAGCAAAGGCAAT 75816 Query 175350 CGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| | ||| ||||| || || | || | || | ||||| ||||||| Sbjct 75815 TGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGTTCAGAATTTGTTGAGATGT 75757 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| || ||| | || |||||||| || | | ||| |||||| | Sbjct 75756 TTGTTGGTGTAGGAGCCTCTCGAGTCCGCGATCTTTTCAAGAAGGCCAAGGAAAATGCTC 75697 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526 | || ||||| || ||||||| |||||||| || || |||| | | |||| | | Sbjct 75696 CCTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTG 75637 Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586 | | || ||||| || || ||||| || | || |||||| | || || |||||||| Sbjct 75636 GAGG--AGGGAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACGGAAATGGATGG 75579 Query 175587 CTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || || | ||||| || | ||| ||||||| || ||||| | ||||| ||||| Sbjct 75578 TTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGA 75519 >seq58966 Length=79355 Score = 111 bits (122), Expect = 2e-19 Identities = 246/366 (67%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || ||||| | || || || ||||| || ||| || | || || ||| Sbjct 42770 CCAGGGACAGGGAAGACATTGCTAGCTAAGGCGATCGCCGGAGAAGCAGAGGTTCCGTTC 42711 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||||| || | || || |||||||||||||||||||| || || ||| Sbjct 42710 TTATCTCTCTCTGGTTCAGAGTTCGTTGAGATGTTTGTTGGTGTGGGAGCTTCTAGAGTT 42651 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | || | || | | || ||||| ||| ||| | ||||| |||||||||||| Sbjct 42650 AGGGACTTATTCAACAAGGCAAAGCAAAATTCACCTTGTTTAGTCTTTATTGATGAGATT 42591 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 ||||| || || | |||| | | ||||| | | |||||| || ||||| || Sbjct 42590 GATGCTGTTGGGAGGCAAAGAGGAACTGGTATTGGTGGTGGAAATGATGAAAGAGAGCAG 42531 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC---AATGAGACTGGCATTGTG 175611 ||| |||| ||||| ||||| || |||||||| ||| || || | ||||| | | Sbjct 42530 ACACTTAACCAACTTCTCACTGAAATGGATGG-TTTTACTGGAA--ACACTGGAGTCATT 42474 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671 || ||||| || |||||| | || || |||||| | || | ||||| || || | Sbjct 42473 GTCATTGCTGCTACTAATAGGCCTGAAATTCTTGATCAAGCTTTGCTTCGACCTGGAAGA 42414 Query 175672 TTTGAT 175677 |||||| Sbjct 42413 TTTGAT 42408 >seq65957 Length=165596 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 75189 |||| ||||| || |||||||||| ||||||||||||||| | || || | || | | Sbjct 148164 GACTTTGATTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCTTACCTCTTAAAGATT 148105 Query 75190 CGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCA 75249 | | || | | | |||| ||||| ||||| | ||| | || | | || ||||| Sbjct 148104 C-AGGGTAAAGTTGTAGAAAGGCCACAACACATGCTGATGAGAGTATCTGTTGGGATCCA 148046 Query 75250 CGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 75309 | ||| || ||||| |||||| | ||||||| | |||||| ||| | ||||| Sbjct 148045 CAAGGATGATATTGAATCTGTCATCAAGACATATCATTTGATGTCTCAACGATGGTTCAC 147986 Query 75310 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| ||| | ||||| | || |||||||| || |||||||| || Sbjct 147985 TCATGCATCTCCAACATTATTTAATGCTGGAACTCCAAGACCTCA 147941 >seq154018 Length=23313 Score = 98.7 bits (108), Expect = 1e-15 Identities = 193/282 (68%), Gaps = 14/282 (5%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || |||||||| | || |||| | || ||||| || ||| ||||| Sbjct 12458 CCTGGTACTGGTAAGACCCTTTTGGCTAGAGCAGTAGCTGGTGAGGCAGGTGTGCCATTT 12399 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || || | ||||| ||| ||||||| |||||||| || || || Sbjct 12398 TTCTCATGTGCAGCATCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTA 12339 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||||| | || | ||| | || |||||||| || ||||||||||| Sbjct 12338 AGGGATTTGTTTGAGAAGGCGAAGTCGAAAGCG-CCTTGTATTGTGTTTATTGATGAGAT 12280 Query 175494 TGATGCGGTGGGCAAGCAA-----CGCAGCGC-TGGTGGTATGCCAGCAAATGACGAGAG 175547 |||||| || || | |||| |||| || ||| ||| | |||||| ||||| Sbjct 12279 TGATGCTGTTGGAAGGCAAAGAGGGGCAGGGCTTGGAGGT------GGAAATGATGAGAG 12226 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 ||| || || |||||||| || | || || |||||||| || Sbjct 12225 AGAGCAGACTATTAATCAGCTCTTGACAGAAATGGATGGGTT 12184 >seq119769 Length=87979 Score = 93.3 bits (102), Expect = 5e-14 Identities = 189/276 (68%), Gaps = 11/276 (4%) Strand=Plus/Plus Query 64957 TACATTAAGGATGGATCTGA--AAAGAAGCAG-TTATTTGAAGCCATCCAAACTGTACCA 65013 ||||| ||||| ||||| ||| |||||| ||||| || | | ||| | || Sbjct 78605 TACATCAAGGAC---TCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATCCCC 78661 Query 65014 TGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCG-CTCCTT 65072 ||| |||||||||||||||| |||||| | ||| | ||| || || | || Sbjct 78662 TGTGTTGAGAAGAAGGCGAAGTGGGCACTACGTTGGATCGAC----GGTTCCGAAACATT 78717 Query 65073 CGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTG 65132 || ||||| | |||| ||||| |||||||| ||||| || ||||| || ||||| Sbjct 78718 TGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTCTG 78777 Query 65133 CGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACT 65192 ||||| | ||||| || |||||||| | ||||| || || |||||| || || | Sbjct 78778 TGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACCTTCTCGAACGAGTT 78837 Query 65193 TATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 ||||| | || || ||| | ||| || ||||| Sbjct 78838 GATTTCAAGGGACGAAGGTTTGCACTGTGATTTTGC 78873 >seq73353 Length=20824 Score = 91.5 bits (100), Expect = 2e-13 Identities = 192/283 (68%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || ||||| || | || |||| | || ||||| || ||| ||||| Sbjct 9493 CCTGGCACTGGTAAGACACTTTTGGCTAGAGCAGTAGCTGGTGAGGCAGGTGTGCCATTT 9434 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || || | ||||| ||| ||||||| |||||||| || || || Sbjct 9433 TTCTCATGTGCAGCATCAGAGTTTGTTGAGTTGTTTGTCGGTGTGGGAGCTTCTAGAGTA 9374 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||||| | || | ||| | || |||||||| || ||||||||||| Sbjct 9373 AGGGATTTGTTTGAGAAGGCGAAGTCGAAAGCG-CCTTGTATTGTGTTTATTGATGAGAT 9315 Query 175494 TGATGCGGTGGGCAAGCAACG-----CAGCGCT-GGTGGTATGCCAGCAAATGACGAGAG 175547 |||||| || || | |||| | ||| ||| || ||| | |||||| ||||| Sbjct 9314 TGATGCTGTTGGAAGGCAAAGAGGGGCAGGGCTTGGAGGT------GGAAATGATGAGAG 9261 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || || || ||||||||||| | || || |||||||| ||| Sbjct 9260 GGAGCAGACTATTAATCAACTGTTGACAGAAATGGATGGGTTT 9218 >seq3570 Length=110709 Score = 89.7 bits (98), Expect = 6e-13 Identities = 242/363 (67%), Gaps = 8/363 (2%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAG-ATCCC 175289 ||| | || || ||| | ||| | |||||||| | || | ||||| | | | || || Sbjct 52957 GAGGTCGTAGAATTTTTGAAGAAGCCCGAGAGGT-TTACCGCAGTGGGGGCTCGTATTCC 53015 Query 175290 CCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCAT 175349 ||| | ||||| | ||| || ||||| || |||||||| || || || || Sbjct 53016 AAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAGACCCTGCTAGCAAAGGCAAT 53075 Query 175350 CGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| | ||| ||||| || || | || | || | ||||| ||||||| Sbjct 53076 TGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGTTCAGAATTTGTTGAGATGT 53134 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| || ||| | || || ||||| || | | ||| |||||| | Sbjct 53135 TTGTTGGTGTAGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTC 53194 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526 | || ||||| || ||||||| |||||||| || || |||| | | |||| | | Sbjct 53195 CCTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTG 53254 Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586 | | || ||||| || || ||||| || | || |||||| | || || |||||||| Sbjct 53255 GAGG--AGGGAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACGGAAATGGATGG 53312 Query 175587 CTT 175589 || Sbjct 53313 TTT 53315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595314961931360