Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq156841 158 1e-32 seq119769 152 6e-31 seq130572 93.3 5e-13 seq86999 87.8 2e-11 >seq156841 Length=49269 Score = 158 bits (174), Expect = 1e-32 Identities = 198/272 (73%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| || || ||||| ||||||||||| || || | | |||| || |||||| Sbjct 13204 GAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGG 13263 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| ||||| ||||| || ||||||||||| |||||||||| Sbjct 13264 ACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAA 13323 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| || || | || || | | || | ||||||| | Sbjct 13324 AAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGG 13383 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 || |||| | || || || || || ||||||| ||||| ||| ||||||||| Sbjct 13384 GTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTAC 13443 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 || ||||| | ||| |||| | || ||||| Sbjct 13444 ATTTCCCAAATTTGTGGGTATTGAATTGGGAA 13475 >seq119769 Length=87979 Score = 152 bits (168), Expect = 6e-31 Identities = 197/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || |||||||| || || ||||| ||||||||||| || || | | |||| || |||||| Sbjct 78576 GAATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCCGCAACTTGG 78517 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| ||||| ||||| || ||||||||||| |||||||||| Sbjct 78516 ACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAA 78457 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || ||||| || |||| || || | ||| || | | || | ||||||| | Sbjct 78456 AAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAGTGACGG 78397 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 || || | | || || ||||| || ||||||| ||||| ||| ||||||||| Sbjct 78396 GTATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTAC 78337 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 || ||||| | ||| |||| | || ||||| Sbjct 78336 ATTTCCCAAATTTGTGGGTATTGAATTGGGAA 78305 >seq130572 Length=54879 Score = 93.3 bits (102), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| | |||||||| |||||| ||||| || || ||||||| || Sbjct 47715 GCTGCTAACTATTTGAACATCAAGAGTCTGCTTGATCTCACTTGTCAGACTGTGGCAGAC 47656 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| || | || |||||||||||||||||||| ||||||||| Sbjct 47655 ATGATCAAGGGGAAAACTCCGGAGGAGATCCGCAAGACCTTCAACATCAAG 47605 >seq86999 Length=32210 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||| | |||||||| ||||| ||||| || | ||||||| || Sbjct 15531 GCTGCCAACTACTTGAACATCAAGAGCCTGCTTGATCTCACATGTCAAACTGTGGCTGAC 15472 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||| || || ||| | || ||||||||||| |||||||||||||||||| Sbjct 15471 ATGATTAAAGGGAAGACACCAGAGGAGATCCGGAAGACCTTTAACATCAAG 15421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6093332063279299