Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq156841 122 1e-21 seq119769 116 6e-20 >seq156841 Length=49269 Score = 122 bits (134), Expect = 1e-21 Identities = 177/249 (71%), Gaps = 1/249 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| |||||||| || |||||||| | ||||| ||||| || ||||||||| Sbjct 13249 GCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCG 13308 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||||||||| |||||||| |||| || || | || || | | || Sbjct 13309 TCTGAGGCGGCGAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGG 13368 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | ||||||| || |||| | ||||| || || || ||||| || ||||| Sbjct 13369 GTTTCCCAGTGACGGGTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCT 13428 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 ||| ||||||||||| ||||| || || |||| | || ||||||| | || ||| Sbjct 13429 AAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATACAGAACCGA 13488 Query 796390 T-TGGGGTT 796397 | |||| || Sbjct 13489 TCTGGGCTT 13497 Score = 93.3 bits (102), Expect = 7e-13 Identities = 194/288 (67%), Gaps = 7/288 (2%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | || ||||| || | ||| || || |||||||| || || |||||||| Sbjct 12964 CCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAA 13023 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || || || || |||||| | || | ||||| ||||| || || || || Sbjct 13024 ATACCTTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGAACCATC---- 13079 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| | ||||||| ||||| ||| || |||| | || || | ||| Sbjct 13080 --GATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCG 13137 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 || || | | || ||| | | |||||||| ||| | || | || || ||| Sbjct 13138 CGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTAC 13197 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATA-AAAGCA 794666 |||| |||||||||||||| || ||||| |||||||| || |||||| Sbjct 13198 ATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA 13245 >seq119769 Length=87979 Score = 116 bits (128), Expect = 6e-20 Identities = 176/249 (71%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | |||||||| || |||||||| | ||||| ||||| || ||||||||| Sbjct 78531 GCCTCCGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCG 78472 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||||||||| ||||| || |||| || || | ||| || | | || Sbjct 78471 TCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGG 78412 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | ||||||| || || | | ||||| ||||| || ||||| || ||||| Sbjct 78411 GTTTCCCAGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCT 78352 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 ||| ||||||||||| ||||| || || |||| | || ||||||| | || ||| Sbjct 78351 AAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATACAGAACCGA 78292 Query 796390 T-TGGGGTT 796397 | |||| || Sbjct 78291 TCTGGGCTT 78283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7898349199235433