Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq168246 93.3 2e-14 seq162548 93.3 2e-14 seq102426 93.3 2e-14 seq98499 93.3 2e-14 seq3055 93.3 2e-14 seq163744 89.7 2e-13 seq144433 86.0 2e-12 seq81657 86.0 2e-12 seq134175 82.4 3e-11 >seq168246 Length=155943 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 38360 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 38419 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 38420 CTGCTCTACCCCGC 38433 >seq162548 Length=158198 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 79869 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 79928 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 79929 CTGCTCTACCCCGC 79942 >seq102426 Length=2395 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 1207 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 1266 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 1267 CTGCTCTACCCCGC 1280 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 1525 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 1584 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 1585 CTGCTCTACCCCGC 1598 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 1891 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 1950 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 1951 CTGCTCTACCCCGC 1964 >seq98499 Length=46788 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 538 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 597 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 598 CTGCTCTACCCCGC 611 >seq3055 Length=68109 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 1136 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 1077 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 1076 CTGCTCTACCCCGC 1063 >seq163744 Length=218470 Score = 89.7 bits (98), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| |||||| || |||||||||| || Sbjct 48740 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGTCTTGCGAGCTACCAAA 48799 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 48800 CTGCTCTACCCCGC 48813 >seq144433 Length=32099 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | |||||||||| || | |||| ||| ||||||||| | |||||||| || Sbjct 10965 GTTGCGGAGACAGGATTTGAACTCGTGACCTCAAGGTTATGAGCCTTGTGAGCTACCAAA 10906 Query 50170 CTGCTCTACTCCGCA 50184 ||||||||| ||||| Sbjct 10905 CTGCTCTACCCCGCA 10891 >seq81657 Length=86867 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 ||||| || | ||||||||||||| | | || ||| ||||||||| |||||||||| ||| Sbjct 62802 TTGCGAAGACAGGATTTGAACCCGTGACTTCAAGGTTATGAGCCTTGCGAGCTACCAAAC 62743 Query 50171 TGCTCTACTCCG 50182 |||||||||||| Sbjct 62742 TGCTCTACTCCG 62731 >seq134175 Length=44109 Score = 82.4 bits (90), Expect = 3e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| ||||||||| || Sbjct 2047 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACAAAA 1988 Query 50170 CTGCTCTA 50177 |||||||| Sbjct 1987 CTGCTCTA 1980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181240368951114