Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq128904 82.4 1e-10 >seq128904 Length=36454 Score = 82.4 bits (90), Expect = 1e-10 Identities = 188/276 (68%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 193803 GGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCTAGAAGT 193862 |||||||||||||| || | || || || ||||| | ||||| || ||| || | || Sbjct 27265 GGGCCAACTTATTACCAGAGGCTGAAGCACATGGTGGATGATAAGATCCATTCTCGTGGT 27206 Query 193863 CATGGACAAGTGACTACT-TTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGG 193921 | ||| | ||| | | |||| | |||| || | || | |||| | |||||| Sbjct 27205 CGTGGTCCTGTGCAGATTCTTAC-TAGACAGCCTGCTGAAGGGAGATCTCGGGATGGAGG 27147 Query 193922 TTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCTACTCAATTCTT 193981 || ||||||| || |||||| ||||||||| | | |||||| ||| | || ||| | Sbjct 27146 CCTACGATTTGGGGAGATGGAGCGAGACTGTATGATCGCTCATGGGGCTGCACATTTCCT 27087 Query 193982 GAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAG-AATGTG 194040 || || || ||||| | ||| ||| ||| |||| ||| ||| |||||| Sbjct 27086 CAAAGAGAGGCTGTTTGATCAAAGCGATGCTTACAGAGTTCATGTATGC-CAGCAATGTG 27028 Query 194041 GTATGATTACAAGTACT--TCTAAAAA--ATGTCAT 194072 || | ||| ||| | || |||||||| ||||||| Sbjct 27027 GTTTAATTGCAATTGCTAATCTAAAAAAGATGTCAT 26992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633841765929160