Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq27789 111 2e-19 seq86621 98.7 1e-15 seq116815 95.1 1e-14 seq118583 91.5 1e-13 seq66466 91.5 1e-13 seq99787 89.7 5e-13 seq23306 89.7 5e-13 seq121930 87.8 2e-12 seq60793 87.8 2e-12 seq156999 86.0 6e-12 seq48865 84.2 2e-11 >seq27789 Length=27798 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| |||| | ||| | ||| | ||| | || || ||||| || ||||||||||| Sbjct 5048 GCCACCTCTAAGACGAAGAACAAGATGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGC 5107 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||| ||| ||| || ||||| || || ||| ||||||| | ||||| || ||||| Sbjct 5108 CAATGTCCTCCCGTCCTCAAGTTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCCGGAGG 5167 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||| ||| ||||| | || | || |||| ||| || Sbjct 5168 AATACCTTCCTTGTCTTGAATCTTTGCTTTTACATTGTCGATAGTATCTGAACTTTCAAC 5227 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| || | ||||||||||| | ||| || || || || |||||| Sbjct 5228 TTCAAGGGTGATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCATA 5276 >seq86621 Length=111109 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||| ||| | ||| | || | || || || ||||| ||||||||||| Sbjct 91591 CCACCACGTAGACGAAGAACAAGGTGGAGAGTTGACTCCTTTTGAATGTTGTAATCCGCA 91532 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | || | || ||||||||||| || ||| |||||| |||||| ||||| || || Sbjct 91531 AGAGTCCGTCCA-TCCTCGAGTTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGG 91473 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| ||||| ||| | | || | |||||||| || || Sbjct 91472 AATACCTTCTTTGTCCTGGATTTTCGATTTAACATTGTCGATCGTGTCTGAACTCTCAAC 91413 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | ||| | |||||||| || | || ||||| || || ||||| Sbjct 91412 TTCGAGAGTTATAGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCAT 91365 >seq116815 Length=25284 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 137186 CTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCA 137245 |||| || | |||||| || | ||| | ||| ||||| || || ||||| ||||| | Sbjct 19377 CTCCGCGAAGACGCAACACAAGATGGAGTGTGGATTCCTTCTGAATGTTATAATCAGCAA 19436 Query 137246 TTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 ||| |||| |||||||||||||| |||||||| || | | ||| || || ||||| Sbjct 19437 GTGT--TCGACCATCTTCGAGTTGTTTTCCAGCATAAATTAACCTTTGTTGGTCTGGAGG 19494 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTA 137362 || ||||| ||||| | | | ||||||||| | | || | ||||||| | || | Sbjct 19495 AATTCCTTCCTTGTC-TTGAATCTTTGTTTTAACATTGTCAATGGTGTCTGAGCTCTCAA 19553 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATT 137406 |||| | || | ||||| || || | || || ||||| ||| Sbjct 19554 CTTCGAGTGTTATGGTCTTTCCAGTAAGGGTCTTGACGAAGATT 19597 >seq118583 Length=73751 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| ||| || || ||||| || |||||||| | || | | || ||||| ||| Sbjct 39582 TGAAGTGTCGACTCCTTTTGAATATTGTAATCTGCGAGAGTACGCCCATCCTCGAGCTGT 39641 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || || ||| |||||| |||||| ||||| || || || ||||||||||| ||||| Sbjct 39642 TTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTG 39701 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 ||| | | || | |||||||| || ||||| | ||| | |||||||| ||| Sbjct 39702 GCTTTAACATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTC 39761 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | || || || || || ||||| Sbjct 39762 AGGGTCTTCACAAAGATCTGCAT 39784 >seq66466 Length=51600 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||||| | ||| | || || |||| || ||||| ||||| |||||||| ||| Sbjct 29064 GCCTCCTCTAAGACGGAGCACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGC 29123 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || || ||||||||| || || || || ||||||| | |||||| || || || Sbjct 29124 TAGGGTTCTGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGGTCCGGTGG 29183 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| ||| || || | | || | ||||| | | ||| || Sbjct 29184 GATTCCTTCTTTGTCCTGAATCTTAGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAAC 29243 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | ||||| || || | ||||| ||||| || ||||| Sbjct 29244 CTCAAGGGTTATGGTCTTTCCAGTTAGGGTTTTAACGAAGATCTGCAT 29291 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||| || |||| ||||| || || || ||||||||||| Sbjct 28837 CCGCCGCGAAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCG 28896 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||| ||||| || || ||| ||||||| | |||||| ||||| || Sbjct 28897 AGGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCGGGTGGG 28956 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || ||||| || ||||| || | | || | ||||| | | ||| ||| Sbjct 28957 ATTCCCTCTTTATCCTGGATTTTCGCCTTAACGTTATCAATAGTGTCGGAGCTTTCAACT 29016 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | || || ||||| | ||||| ||||| |||||||| Sbjct 29017 TCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 29063 >seq99787 Length=38434 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || ||||| || ||||||||||| || ||| ||| ||| || ||||| || ||| Sbjct 19857 GTTGACTCTTTCTGAATGTTGTAATCTGCCAATGTCCTCCCGTCCTCAAGTTGCTTCCCA 19798 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| ||||||| | | ||| || ||||| || ||||| ||||| || ||| ||| Sbjct 19797 GCAAAGATCAGTCTCTACTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTTACTTTA 19738 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || |||| ||| ||||||| || | ||||||||||| | || Sbjct 19737 ACATTGTCAATGGTATCTGAACTTTCAACTTCAAGGGTGATTGTCTTGCCGGTAAGCGTC 19678 Query 137395 TTTACGAATATTTGCAT 137411 || || || || ||||| Sbjct 19677 TTGACAAAGATCTGCAT 19661 >seq23306 Length=7682 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/231 (70%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | |||||| || | ||| | || ||||| || || || |||||||| Sbjct 4498 CCTCCGCGAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGCA 4557 Query 137245 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | ||| |||| || ||||||||||| |||||| | || | | ||| ||||| |||| Sbjct 4558 AGTGT--TCGACCATCCTCGAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAG 4615 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC--TGTTCCACCGTGTCTGTGGGTTC 137360 | || ||||| ||||| | | ||||||||||| | | || | ||||| | | || Sbjct 4616 GAATTCCTTCCTTGTC-TTGAATTTTTGTTTTAACATTTATCAATGGTGTCCGAGCTCTC 4674 Query 137361 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || | || | ||||| || || | ||| || || || |||||||| Sbjct 4675 AACCTCGAGTGTAATGGTCTTTCCTGTGAGTGTCTTAACAAAGATTTGCAT 4725 >seq121930 Length=130577 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGA 137255 |||| || ||||| | || ||||| || || ||||||||||| ||| | ||| || Sbjct 39737 CGCAGCACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAATCAGCT-AGTGTCCTTCC 39795 Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 || || || || || |||||| | || || | ||||| || || || || ||||| || Sbjct 39796 ATCCTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCAGGTGGAATCCCTTCCTT 39855 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 || ||||||| || | | || | ||||| | | || ||||||| ||| | Sbjct 39856 ATCTTGAATTTTTGCCTTAACATTGTCGATGGTGTCCGAGCTCTCAACTTCAAGAGTAAT 39915 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || |||||||| ||||| || || ||||||||| Sbjct 39916 AGTTTTCCCGGTCAAGGTTTTCACAAAGATTTGCATA 39952 >seq60793 Length=88643 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 |||||| | |||| || |||||||| || ||||||||||| || || | | || Sbjct 4412 CAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGCCCATC 4353 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| | ||||| |||||| | ||||| | |||||||| ||||||||||||||||| || Sbjct 4352 TTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATC 4293 Query 137319 --GGTAA 137323 ||||| Sbjct 4292 CTGGTAA 4286 >seq156999 Length=15918 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || ||||| || ||||||||||| ||| | | ||| ||| || ||||| || ||| Sbjct 8129 GTTGACTCTTTCTGAATGTTGTAATCTGTCAAT-TCCTCCCGTCCTCAAGTTGCTTCCCA 8071 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| ||||||| | ||||| || ||||| || ||||| ||||| || ||| ||| Sbjct 8070 GCAAAGATCAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTTGATTTA 8011 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || ||| ||| ||||||| || | ||||||||||| | || Sbjct 8010 ACATTGTCGATGGTATCTTAACTTTCAACTTCAAGGGTGATTGTCTTGCCGGTAAGCGTC 7951 Query 137395 TTTACGAATATTTGCAT 137411 || || || || ||||| Sbjct 7950 TTGACAAAGATCTGCAT 7934 >seq48865 Length=263615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| | | |||||| | |||| ||| |||||||| || || |||||||| | Sbjct 56273 CCTCCTCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGCC 56332 Query 137245 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | || |||| ||||| | ||||| |||||| | ||||| | ||||| || |||| Sbjct 56333 AGAGT--TCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCAGGAG 56390 Query 137303 GTATGCCTTCTTTGTC--GGTAA 137323 |||| ||||||||||| ||||| Sbjct 56391 GTATCCCTTCTTTGTCCTGGTAA 56413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487516549220400