Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq156841 84.2 5e-11 seq119769 84.2 5e-11 >seq156841 Length=49269 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 || || ||||||||||| |||||||| || || || || ||||||||||| || ||| Sbjct 13049 GTTGCCTTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTCTGTGCTATATTCTGG 12990 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 | || ||||| || || ||||||||| | | || || || | || || || || || Sbjct 12989 TTAAAAAAGCGGGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATTTCAAGGGAC 12930 Query 131984 GAAGCATTGCATACTGAATTTGCT 132007 |||| ||||| ||| |||||| Sbjct 12929 GAAGGTTTGCACTGTGATTTTGCT 12906 >seq119769 Length=87979 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 || || ||||||||||| |||||||| || || || || ||||||||||| || ||| Sbjct 78731 GTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTCTGTGCTATATTCTGG 78790 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 | || ||||| || || ||||||||| | | || || || | || || || || || Sbjct 78791 TTAAAAAAGCGGGGGTTAATGCCTGGATTAACCTTCTCGAACGAGTTGATTTCAAGGGAC 78850 Query 131984 GAAGCATTGCATACTGAATTTGCT 132007 |||| ||||| ||| |||||| Sbjct 78851 GAAGGTTTGCACTGTGATTTTGCT 78874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184254429556367