Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq86621 91.5 1e-13 seq118583 89.7 5e-13 seq60793 87.8 2e-12 seq133954 84.2 2e-11 seq99573 84.2 2e-11 >seq86621 Length=111109 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATG-GTACGCGAATCTTCGAGCTGTTTACCG 131986 ||||||| |||||||||||||| || | || | || || ||| ||||| ||||| || Sbjct 91560 TTGACTCCTTTTGAATGTTGTAATC-CGCAAGAGTCCGTCCATCCTCGAGTTGTTTTCCT 91502 Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTC 132046 | | |||| | ||| ||||||||||| || || |||||||| || ||||| ||| Sbjct 91501 GCAAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTCGATTTA 91442 Query 132047 AACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106 | | || | || || | ||| ||||||| || | || || ||||| ||||| Sbjct 91441 ACATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTAAGAGTC 91382 Query 132107 TTTATGAAAATCTGCAT 132123 |||| || |||||||| Sbjct 91381 TTTACAAAGATCTGCAT 91365 >seq118583 Length=73751 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||| ||||| || | |||||| ||| ||||||||||| || | | Sbjct 39591 GACTCCTTTTGAATATTGTAATCTGCGAGAGTACGCCCATCCTCGAGCTGTTTTCCTGCA 39650 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||| ||||||||||| || || |||||||| || ||||| ||| | Sbjct 39651 AAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTGGCTTTAACA 39710 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||| ||||||| || | || || |||||||| || || Sbjct 39711 TTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTCAGGGTCTTC 39770 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 39771 ACAAAGATCTGCAT 39784 >seq60793 Length=88643 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||| ||||||||||| || || ||| ||| |||||| | |||||| || | Sbjct 4395 TTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGCCCATCTTCCAACTGTTTCCCAG 4336 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC--GGTAA 132035 | | || || | ||| ||||| |||||||||||||||||||| ||||| Sbjct 4335 CAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATCCTGGTAA 4286 >seq133954 Length=6269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| || ||||| || | ||| ||| ||| || ||||| ||||| | | Sbjct 5388 GATTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTCCAGCTGCTTACCAGCA 5447 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | ||| |||||||| || || ||||||||||| |||||| |||| Sbjct 5448 AATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTGAATTTTGGCCTTCACG 5507 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | ||||||||| | || | || || || |||| |||||| Sbjct 5508 TTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCTGTCAAAGTTTTG 5567 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 5568 ACAAAAATCTGCAT 5581 >seq99573 Length=152460 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || ||||||||||| ||| | |||||| ||| ||| Sbjct 109116 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCGAGGGTACGGCCATCCTCG 109057 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| |||| | | ||| || |||||||| ||||| || ||||| | Sbjct 109056 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGAGGAATGCCCTCCTTATCCTGA 108997 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | || | ||||| | ||| || || | || | ||||| Sbjct 108996 ATTTTGGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCAAGGGTGATTGTTTTG 108937 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| | ||| |||||||| Sbjct 108936 CCGGTGAGGGTTTTGACGAAGATCTGCAT 108908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475608844942920