Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq80051 104 2e-17 seq48865 91.5 1e-13 seq7707 82.4 6e-11 >seq80051 Length=167733 Score = 104 bits (114), Expect = 2e-17 Identities = 178/255 (70%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 106236 TTTGTCATT-TATAAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGAC 106294 ||| ||||| ||| | | || | |||||||| |||||||| ||| | ||||| ||||| Sbjct 386 TTTCTCATTGTATGCAATTATACAGATGCAAATCTTTGTTAAGACACTAACTGGAAAGAC 445 Query 106295 CATTACCGTGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGA 106354 |||||| | || ||| | ||| || ||| | | || ||| ||||||| || Sbjct 446 CATTACACTCGAGGTT-AACTC--CGACACTATTGACAATGTTAAAACAAAAATTCAAGA 502 Query 106355 CAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGA 106414 ||| ||||| | || |||||||||||| | |||| ||| || |||||| | ||||| Sbjct 503 CAAGGAAGGAATTCCTCCAGATCAACAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGA 562 Query 106415 TTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 | | ||| | | |||||||| || || || ||||| || || ||| | || ||| | Sbjct 563 TGGTCGAACACTTGCTGATTACAATATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCG 622 Query 106475 GTTACGAGGAGGATA 106489 | || ||||| || Sbjct 623 TCTTCGCGGAGGTTA 637 >seq48865 Length=263615 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||||||||| | || ||| || || ||||| |||| ||| || ||||| || ||| Sbjct 56406 GACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTGATTTTTGCTGGAAAACAGTTGGAA 56347 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | |||| ||| |||||||| || || |||||||| ||||| || | || ||| Sbjct 56346 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACCTGGTTTTG 56287 Query 106473 AGGTTACGAGGAGGA 106487 ||| | |||||||| Sbjct 56286 AGGCTCAGAGGAGGA 56272 >seq7707 Length=91995 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||||||||| | || |||||| || ||| | |||| ||| || ||||| || ||| Sbjct 30963 GACAAAGAAGGGATACCTCCTGATCAGCAGAGGTTGATTTTTGCTGGAAAACAGTTGGAA 31022 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | |||| ||| |||||||| || || |||||||| ||||| || | || || Sbjct 31023 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACCTGGTTTTA 31082 Query 106473 AGGTTACGAGGAGGA 106487 ||| | | |||||| Sbjct 31083 AGGCTCAGGGGAGGA 31097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401504619006176