Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq156841 174 2e-37 seq119769 161 1e-33 >seq156841 Length=49269 Score = 174 bits (192), Expect = 2e-37 Identities = 357/523 (68%), Gaps = 12/523 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | |||| | || |||||||||||| |||||| | || |||| || Sbjct 13477 TGTTCCCAATTCAATACCCACAAATTTGGGAAATGTACAAAAAAGCCTTAG-CCTCTTTC 13419 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 ||||| || || || ||||| | |||| || ||||||| | || | | | Sbjct 13418 TGGACTGCTGAAGAAGTCGATTTATCTTCCGATACCCGTCACTGGGAAACCCTAACCCCC 13359 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 | || | |||||||||| |||||||| |||||||| ||||||| || |||||||| Sbjct 13358 GGTGAAAGGCATTTCATCACTCACGTCCTTGCCTTTTT-CGCCGCCTCAGACGGCATCGT 13300 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA-TTGCCAGAGGCACGTTTGT 1455991 || ||||| ||||| | || |||||||| |||||| ||||| ||||| ||| | Sbjct 13299 TTTAGAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCAAGTTGCC-GAGGCGCGTGCTT 13241 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 | ||||| ||||| ||||| || |||||||||||||| || | ||| || || | | Sbjct 13240 TCTACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTACAGTCTGCTTCTAG 13181 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 | | ||| |||||||| | | ||| || | | || ||||| | || || | | Sbjct 13180 AGTCGTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATCC 13121 Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 | | || ||| ||||| | ||||| | |||||| || || ||| | Sbjct 13120 CCTGTGTTGAGAAGAAGGCGAAGTGGGCCCTACGTTGGATC------GATGGTTCCGAAA 13067 Query 1456172 C-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 | ||||| ||||| | || | |||||| | || || || || |||||||| || || | Sbjct 13066 CATTTGCGGAGCGTTTGGTTGCCTTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCT 13007 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 |||| || || || ||| | || ||||| || | ||||| || Sbjct 13006 TCTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGG 12964 >seq119769 Length=87979 Score = 161 bits (178), Expect = 1e-33 Identities = 352/522 (67%), Gaps = 10/522 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | |||| | || |||||||||||| |||||| | || |||| || Sbjct 78303 TGTTCCCAATTCAATACCCACAAATTTGGGAAATGTACAAAAAAGCCTTAG-CCTCTTTC 78361 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 ||||| || ||||| ||||| | | || || ||||||| | || | | | Sbjct 78362 TGGACTGCTGAGGAAGTCGATTTATCTTCAGATACCCGTCACTGGGAAACCCTAACCCCC 78421 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 | ||| | |||||||||| || ||||| ||||||| |||||||| || |||||||| Sbjct 78422 GGCGAAAGGCATTTCATCACTCATGTCCTTGCCTTTT-TCGCCGCCTCAGACGGCATCGT 78480 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992 || ||||| ||||| | || |||||||| |||||| | | ||||| ||| || Sbjct 78481 TTTAGAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCAAGTTGCGGAGGCGCGTGCTTT 78540 Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052 ||||| ||||| ||||| || ||||||||||| || || | ||| || || | || Sbjct 78541 CTACGGCTTCCAAATCGCGATTGAAAACATCCATTCCGAGATGTACAGTCTGCTTCTAGA 78600 Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 | ||| |||||||| | | ||| || | | || ||||| | || || | || Sbjct 78601 GTCTTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATCCC 78660 Query 1456113 GTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC 1456172 | || ||| ||||| | ||||| | |||||| || || ||| || Sbjct 78661 CTGTGTTGAGAAGAAGGCGAAGTGGGCACTACGTTGGATC------GACGGTTCCGAAAC 78714 Query 1456173 -TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||||| ||||| | || | ||||| | || || || || |||||||| || || || Sbjct 78715 ATTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTT 78774 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||| || || || ||| | || ||||| || | ||||| || Sbjct 78775 CTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGG 78816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7161583467612014