Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq156841 145 6e-30 seq119769 129 5e-25 >seq156841 Length=49269 Score = 145 bits (160), Expect = 6e-30 Identities = 565/875 (65%), Gaps = 21/875 (2%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||||||||| | | || ||| |||||||||||||||| || || || | Sbjct 13477 TGTTCCCAATTCAATACCCACAAATTTGGGAAATGTACAAAAAAGCCTTAGCCTCTTTCT 13418 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA--CATTGGATTGCATTAAAACC 43824 |||| || |||||||| ||||| || || || | || ||| | ||| || Sbjct 13417 GGACTGCTGAAGAAGTCGATTTATCTTCCGA--TACCCGTCACTGGGAAACCCTAACCCC 13360 Query 43825 ACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 |||| ||||| || || || | || ||||| || || ||||| || || Sbjct 13359 CGGTGAAAGGCATTTCATCACTCACGTCCTTGCCTTTTTCGCCGCCTCAGACGGCATCGT 13300 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 ||||| | | | |||| | ||||||| ||| | | || || || ||| Sbjct 13299 TTTAGAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCAAGTTGCCGAGGCGCGTGCTTT 13240 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 || || || ||||| || || ||||| || || || || ||||||||||| || |||| Sbjct 13239 CTACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTACAGTCTGCTTCTAGA 13180 Query 44005 TACGTACATCAAAGATGGGCACGAGAA--GCATCGATTGTTTAATGCGATAGAAACAGTA 44062 |||||||||| || |||| || ||| |||| || || | || || | Sbjct 13179 GTCGTACATCAAGGACTCTGACGAAAAAAGCA--GATTATTCCGCGCAGTTGAGACTATC 13122 Query 44063 CC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 || || | | | | | || || | |||||||| ||||| || || | || Sbjct 13121 CCCTGTGTTGAGA-AGAAGGCGAAGTGGGCCCTACGTTGGATCGATGGTTCCGAAACATT 13063 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGC 44181 || || || | || || ||||| ||||||||| ||||| || || ||| || Sbjct 13062 TGCGGAGCGTTTGGTTGCCTTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTCTG 13003 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 || ||||| |||||||| || || || || |||||||| || || || || || ||||| Sbjct 13002 TGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTT 12943 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGG 44301 ||| | || ||||| || || || ||||||||||| ||| | | | | || | Sbjct 12942 AATTTCAAGGGACGAAGGTTTGCACTGTGATTTTGCTTGTTTGCTTTATAGTTTGTTAAG 12883 Query 44302 AGACGATAAGCCTTCATGTAAGAC-AATTACAGATATTGTTGTAGAGGCAGTAAAGATAG 44360 |||| ||| ||| || || | ||| | ||||||| ||| || || |||||| Sbjct 12882 -GACG--AAG-CTTACTGAGGAACGAGTTAAGGGAATTGTTGCAGATGCTGTGGAGATAG 12827 Query 44361 AACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGA 44420 || || ||| || || | ||| | | |||||||||| | ||||| Sbjct 12826 AAAGGGAGTTTGTGTGTGACGCGCTGCCTTGTGCGCTGGTGGGAATGAATGGAGATTTGA 12767 Query 44421 TGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGA---ACTGGGTTGCGATA 44477 ||| | |||| ||||||| | | || ||| | | | ||||| |||||| |||| Sbjct 12766 TGAGCAAATACATTGAATTCGTGGCTGATAG---ATTGTTGGATGCTTTGGGTTATGATA 12710 Query 44478 AACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAA 44537 | | || | || || || |||||||||| ||||| ||| || |||| || | Sbjct 12709 AGCTGTACAATGCGCAGAATCCGTTTGATTGGATGGAGCTGATTAGTTTACAAGGGAAGA 12650 Query 44538 CAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 | || || ||||| || | ||||| || |||||| Sbjct 12649 CTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAG 12615 >seq119769 Length=87979 Score = 129 bits (142), Expect = 5e-25 Identities = 564/878 (64%), Gaps = 27/878 (3%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||||||||| | | || ||| |||||||||||||||| || || || | Sbjct 78303 TGTTCCCAATTCAATACCCACAAATTTGGGAAATGTACAAAAAAGCCTTAGCCTCTTTCT 78362 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA--CATTGGATTGCATTAAAACC 43824 |||| || || ||||| ||||| || ||| || | || ||| | ||| || Sbjct 78363 GGACTGCTGAGGAAGTCGATTTATCTTCAGA--TACCCGTCACTGGGAAACCCTAACCCC 78420 Query 43825 ACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 |||| ||||| || || || | || ||||| || || ||||| || || Sbjct 78421 CGGCGAAAGGCATTTCATCACTCATGTCCTTGCCTTTTTCGCCGCCTCAGACGGCATCGT 78480 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 ||||| | | | |||| | ||||||| ||| | | || || || ||| Sbjct 78481 TTTAGAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCAAGTTGCGGAGGCGCGTGCTTT 78540 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 || || || ||||| || || ||||| || ||||| || ||||||||||| || |||| Sbjct 78541 CTACGGCTTCCAAATCGCGATTGAAAACATCCATTCCGAGATGTACAGTCTGCTTCTAGA 78600 Query 44005 TACGTACATCAAAGATGGGCACGAGAA--GCATCGATTGTTTAATGCGATAGAAACAGTA 44062 | |||||||| || |||| || ||| |||| || || | || || | Sbjct 78601 GTCTTACATCAAGGACTCTGACGAAAAAAGCA--GATTATTCCGCGCAGTTGAGACTATC 78658 Query 44063 CC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA---TTCAAATGATTC 44118 || || | | | | | || || | ||||| || ||||| | ||| || | Sbjct 78659 CCCTGTGTTGAGA-AGAAGGCGAAGTGGGCACTACGTTGGATCGACGGTTCC---GAAAC 78714 Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT 44178 |||| || || | || || ||||| ||||||||| ||||| || || ||| || Sbjct 78715 ATTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTT 78774 Query 44179 TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 || ||||| |||||||| || || || || |||||||| || || || || || || Sbjct 78775 CTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACCTTCTCGAACGA 78834 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCT 44298 ||| || | || ||||| || || || ||||||||||| ||| | | | | | Sbjct 78835 GTTGATTTCAAGGGACGAAGGTTTGCACTGTGATTTTGCTTGTTTGCTTTATAGTTTGTT 78894 Query 44299 AGGAGACGATAAGCCTTCATGTAAGAC-AATTACAGATATTGTTGTAGAGGCAGTAAAGA 44357 | | |||| ||| ||| || || | ||| | ||||||| ||| || || ||| Sbjct 78895 AAG-GACG--AAG-CTTACTGAGGAACGAGTTAAGGGAATTGTTGCAGATGCTGTGGAGA 78950 Query 44358 TAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTT 44417 ||||| || ||| || || | ||| | | |||||||||| | || Sbjct 78951 TAGAAAGGGAGTTTGTGTGTGACGCGCTGCCTTGTGCGCTGGTGGGAATGAATGGAGATT 79010 Query 44418 TGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGA---ACTGGGTTGCG 44474 |||||| | |||| ||||||| | | || ||| | | | ||||| |||||| | Sbjct 79011 TGATGAGCAAATACATTGAATTCGTGGCTGATAG---ATTGTTGGATGCTTTGGGTTATG 79067 Query 44475 ATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCA 44534 |||| || | || || || |||||||||| ||||| ||| || |||| | Sbjct 79068 ATAAGTTATACAATGCTCAGAATCCGTTTGATTGGATGGAGCTGATTAGTTTACAAGGGA 79127 Query 44535 AAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 | || || || ||||| || | ||||| || |||||| Sbjct 79128 AGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAG 79165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396641012373235