Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq118583 107 2e-18 seq53431 105 6e-18 seq66466 87.8 2e-12 seq162580 84.2 2e-11 >seq118583 Length=73751 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || |||||||||||||| || | | ||| | || ||||||||||| || Sbjct 39588 GTCGACTCCTTTTGAATATTGTAATCTGCGAGAGTACGCCCATCCTCGAGCTGTTTTCCT 39647 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | ||| |||||||| || || | ||| ||||| || ||| ||| ||| Sbjct 39648 GCAAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTGGCTTTA 39707 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||||| |||||||| |||||||||| ||||| ||||| || Sbjct 39708 ACATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTCAGGGTC 39767 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 39768 TTCACAAAGATCTGCAT 39784 >seq53431 Length=29007 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||||||| | || || || || || || ||||| || ||| ||| || | || || Sbjct 13262 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTT-CGACCATCCTC 13204 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||||||| |||||| ||||||| ||||| || ||||| || | || || || || Sbjct 13203 GAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTG 13144 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| |||| | | || | ||||| | || ||| || || || || || | || Sbjct 13143 GATCTTTGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTT 13084 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| |||||||| ||||| ||||| Sbjct 13083 ACCCGTCAGGGTTTTCACGAAGATCTGCAT 13054 >seq66466 Length=51600 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || || ||||| || ||||||||| || ||| || ||||||| Sbjct 29083 ACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGC-CGTCTTC 29141 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| || |||||| | || || | || || ||||| || | || ||||| || Sbjct 29142 GAGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGGTCCGGTGGGATTCCTTCTTTGTCCTG 29201 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| || | | | || | |||||| | | |||||| || || ||||| | || Sbjct 29202 AATCTTAGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTTATGGTCTT 29261 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || ||||| || ||||| ||||| Sbjct 29262 TCCAGTTAGGGTTTTAACGAAGATCTGCAT 29291 >seq162580 Length=72030 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || ||||||||| | | | | |||||||| Sbjct 31955 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCTTCG 32014 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| | || | | ||| || ||||| || | || ||||| || Sbjct 32015 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTCCTGA 32074 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | | || | |||||| | | |||||| || || || || | ||| Sbjct 32075 ATCTTAGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTTTTT 32134 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||||||| ||||| ||||| Sbjct 32135 CCGGTTAGGGTTTTCACGAAGATCTGCAT 32163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424063067630664