Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq138865 125 9e-24 seq90921 116 5e-21 seq58966 111 2e-19 seq65957 102 1e-16 seq154018 98.7 1e-15 seq73353 93.3 5e-14 seq159053 91.5 2e-13 seq3570 89.7 6e-13 >seq138865 Length=42912 Score = 125 bits (138), Expect = 9e-24 Identities = 249/366 (68%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| | || || ||||| | || | |||||| || || | ||||||||| || Sbjct 26080 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTGGCAGC 26139 Query 11512 AATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 ||| || | | ||||| | || || ||| |||||||| || ||||| | ||| || Sbjct 26140 AATGACAATGACTCCAGTGT--TTCCAGTGAAA-CCATCCATTTCAGTGAGAAGTTGGTT 26196 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCAC 11628 || ||| || ||||| ||||||||| | | ||||| | | |||| | || || Sbjct 26197 AAGTGTCTGCTCTCTTTCATCATTTCCACCGCCAATACCAGTTCCTCTTTGCCTCCCAAC 26256 Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688 ||||||||||||||||| ||||| | ||| ||| |||||| || | | || | Sbjct 26257 AGCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTCCTTTGCCTTGTTGAATAA 26316 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCA 11748 || | ||| || || |||||||||||||||||||| ||||| | || ||||| Sbjct 26317 GTCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAACAAACTCTGAACCAGAGAG 26376 Query 11749 CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808 | |||||| || | || ||| || || || || || || | ||||| || || Sbjct 26377 AGATAAGAATGGAACCTCTGCTTCTCCGGCAATCGCCTTAGCTAGCAATGTCTTCCCTGT 26436 Query 11809 ACCTGG 11814 ||||| Sbjct 26437 CCCTGG 26442 >seq90921 Length=83348 Score = 116 bits (128), Expect = 5e-21 Identities = 306/460 (67%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | ||||| || ||||||| ||| | || ||||| | || || Sbjct 75519 TCAAGAATATCTGCACGATTGGTTGCCGCAACAACTATTATACCAGTATTTCCTTCGAAA 75578 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | || ||| || | || ||||| || |||||||| || | | Sbjct 75579 CCATCCATTTCCGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTCCCT--CCTC 75636 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| || || |||||||| ||||||| || ||||| || | Sbjct 75637 CAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAGG 75696 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | |||||| ||| | | || |||||||| || | ||| || |||||||||| Sbjct 75697 GAGCATTTTCCTTGGCCTTCTTGAAAAGATCGCGGACTCGAGAGGCTCCTACACCAACAA 75756 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCG 11779 ||||||| ||||| | || | || | || || ||||| ||| | |||||| || Sbjct 75757 ACATCTCAACAAATTCTGAACCTGA-AATTGAGAAAAATGGAACACCCGCTTCACCAGCA 75815 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || || || || ||||| || || ||||| || ||| | ||||| | ||| Sbjct 75816 ATTGCCTTTGCTAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGAAGAACACCTTTT 75875 Query 11840 GGGAT-CTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || | | | ||||| | || | |||||||| | ||| | ||| || || | ||| Sbjct 75876 GGAATACGAGCCCCCACTGCGGTAA-ACCTCTCGGGCTTCTTCAAAAATTCTACTACCTC 75934 Query 11899 TTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 || || | ||| ||| | || | || |||||||| Sbjct 75935 CATAAAATCTTGTTTTGCCTCATCTACACCAGCAACATCA 75974 >seq58966 Length=79355 Score = 111 bits (122), Expect = 2e-19 Identities = 246/366 (67%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| | || || ||||| | || | |||||| || || | |||||| || || Sbjct 42408 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 42467 Query 11512 AATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 ||| || | | ||||| | || || ||| |||||||| || ||||| | ||| || Sbjct 42468 AATGACAATGACTCCAGTGT--TTCCAGTAAAA-CCATCCATTTCAGTGAGAAGTTGGTT 42524 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCAC 11628 || ||| || ||||| ||||||||| | | ||||| | | |||| | || || Sbjct 42525 AAGTGTCTGCTCTCTTTCATCATTTCCACCACCAATACCAGTTCCTCTTTGCCTCCCAAC 42584 Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688 ||||||||||||||||| ||||| | ||| ||| ||||| || | | || | Sbjct 42585 AGCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTGCTTTGCCTTGTTGAATAA 42644 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCA 11748 || | ||| || || |||||||||||||||||||| || || | || ||||| Sbjct 42645 GTCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAACGAACTCTGAACCAGAGAG 42704 Query 11749 CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808 | ||| || || | || ||| || ||||| || || || | ||||| || || Sbjct 42705 AGATAAGAACGGAACCTCTGCTTCTCCGGCGATCGCCTTAGCTAGCAATGTCTTCCCTGT 42764 Query 11809 ACCTGG 11814 ||||| Sbjct 42765 CCCTGG 42770 >seq65957 Length=165596 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || |||||||| || |||||||| || | ||||| | ||| ||| ||||| | ||| Sbjct 147941 TGAGGTCTTGGAGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGA 148000 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | ||||||| | |||||| ||||| || ||| |||||| || | | Sbjct 148001 GACATCAAATGATATGTCTTGATGACAGATTCAATATCATCCTTGTGGATCCCAACAGAT 148060 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 || | ||| | ||||| ||||| |||| | | | || | || | || | || || Sbjct 148061 ACTCTCATCAGCATGTGTTGTGGCCTTTCTACAACTTTACCCT-GAATCTTTAAGAGGTA 148119 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | ||||||||||||||| |||||||||| || ||||| |||| Sbjct 148120 AGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTC 148164 >seq154018 Length=23313 Score = 98.7 bits (108), Expect = 1e-15 Identities = 193/282 (68%), Gaps = 14/282 (5%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| || || ||||||||||||||| | Sbjct 12184 AACCCATCCATTTCTGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 12239 Query 11600 ATACCACCA-GCACTGCG-----TTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 ||| ||| || |||| |||| | || || ||||||||||||||||| || ||| Sbjct 12240 --ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACA 12297 Query 11654 ATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 ||||| || | ||| | || | ||||| | ||| | || || || ||||| Sbjct 12298 ATACAAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCAC 12356 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772 ||| ||||||| ||| ||||| | || || | || || ||||| ||| || || Sbjct 12357 ACCCACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCTC 12416 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| || | |||| || | |||||||| || ||||| || Sbjct 12417 ACCAGCTACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGG 12458 >seq73353 Length=20824 Score = 93.3 bits (102), Expect = 5e-14 Identities = 269/408 (66%), Gaps = 16/408 (4%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | | ||||||||| || || || |||||||||||| | Sbjct 9218 AAACCCATCCATTTCTGTCAACAGTTGATTAATAGTCTGCTCCCTCTCATCATTTCC--- 9274 Query 11599 CATACCACC-AGCACTG-----CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGAC 11652 ||| || ||| ||| | |||| | || || ||||||||||||||||| || || Sbjct 9275 ---ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACAC 9331 Query 11653 AATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711 |||||| || | ||| | || | ||||| | ||| | || || || |||| Sbjct 9332 AATACAAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCA 9390 Query 11712 CACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATT 11771 |||| ||||||| ||| ||||| | || || | || || ||||| ||| || | Sbjct 9391 CACCGACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCT 9450 Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGG 11831 |||| || | |||| || | || ||||| || || || || ||| | | ||| Sbjct 9451 CACCAGCTACTGCTCTAGCCAAAAGTGTCTTACCAGTGCCAGGTGGTCCCACTAAAAGAC 9510 Query 11832 CGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCA 11891 ||| || ||||| ||||| || |||| | || || | || | ||||| | Sbjct 9511 ACCCTTTTGGTATCTTAGCACCTAAAGCAGTATATTTATCAGGATTTTTCAAGAAATCAA 9570 Query 11892 CAATCTCTT-CAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 ||| |||| ||| | || | |||||| ||| || |||||||| Sbjct 9571 CAACTTCTTGCAACTCCAAC-TTGGCCTGATCAGCACCAGCAACATCA 9617 >seq159053 Length=93502 Score = 91.5 bits (100), Expect = 2e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 145287 TATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGT 145346 ||| |||||||||| | |||||||||||||||||||||| |||| ||||||||||| ||| Sbjct 27685 TATGGTGTAGTGGTTAGCACTTTGGACTTTGAATCCAACGACCCGGGTTCAAATCCCGGT 27626 Query 145347 AGGAGCTT 145354 |||| ||| Sbjct 27625 AGGACCTT 27618 >seq3570 Length=110709 Score = 89.7 bits (98), Expect = 6e-13 Identities = 242/363 (67%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | || ||| || | || ||||| || |||||||| || | Sbjct 53315 AAACCATCCATTTCCGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTCCCT--C 53258 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | | | |||| | | |||| || || |||||||| ||||||| || ||||| | Sbjct 53257 CTCCAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGC 53198 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | || |||||| ||| | | || ||||| || || | ||| || ||||||| Sbjct 53197 AGGGAGCATTTTCCTTGGCCTTCTTGAAAAGATCACGGACTCGAGAGGCTCCTACACCAA 53138 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCC 11776 |||||||||| ||||| | || | || | || || ||||| ||| | |||||| Sbjct 53137 CAAACATCTCAACAAATTCTGAACCTGA-AATTGAGAAAAATGGAACACCCGCTTCACCA 53079 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 || || || || || |||||||| || ||||| || ||| | ||||| | ||| Sbjct 53078 GCAATTGCCTTTGCTAGCAGGGTCTTCCCAGTACCAGGAGGACCAACAAGAAGAACACCT 53019 Query 11837 CGGGGGAT-CTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAAT 11895 || || | | | ||||| | || | |||||||| | ||| | ||| || || | Sbjct 53018 TTTGGAATACGAGCCCCCACTGCGGTAA-ACCTCTCGGGCTTCTTCAAAAATTCTACGAC 52960 Query 11896 CTC 11898 ||| Sbjct 52959 CTC 52957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626711193751200