Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq42040 87.8 2e-12 seq25841 82.4 9e-11 >seq42040 Length=32045 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||| ||||||||||||||||| || || || || | ||||||||| || Sbjct 5558 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 5615 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || |||| | ||| | || || || ||||| ||||| || || || || Sbjct 5616 CCTCCCATTCCTGCACCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATG 5675 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || || || || | ||| | |||||| || || ||||| Sbjct 5676 CAAGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTCCAACACC 5734 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 ||||||| ||| ||||| | | || | |||| || || || || || |||||| Sbjct 5735 AACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGTACACCAGCTTCACC 5794 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || | |||| || | || ||||| || || || ||| Sbjct 5795 AGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGGT 5834 >seq25841 Length=135519 Score = 82.4 bits (90), Expect = 9e-11 Identities = 189/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||| ||||||||||||||||| || || || || | ||||||||| || Sbjct 101642 AAAACCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 101699 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || |||| | ||| | || || || ||||| ||||| || || || || Sbjct 101700 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATG 101759 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || || || || | ||| | |||||| || || ||||| Sbjct 101760 CAAGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTCCAACACC 101818 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 ||||||| ||| ||||| | | | | |||| || || || || || |||||| Sbjct 101819 AACAAACAACTCAACAAACTCTGATGGTGCACATGAGAAAAATGGTACACCAGCTTCACC 101878 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || | |||| || | || ||||| || || || ||| Sbjct 101879 AGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGGT 101918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617134576661320