Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq90921 131 2e-25 seq25841 127 2e-24 seq42040 123 3e-23 seq3570 123 3e-23 seq73353 113 5e-20 seq154018 105 8e-18 seq138865 102 9e-17 seq58966 95.1 1e-14 seq65957 86.0 7e-12 >seq90921 Length=83348 Score = 131 bits (144), Expect = 2e-25 Identities = 274/399 (69%), Gaps = 12/399 (3%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 75488 ATCAAATCGCCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 75547 Query 9586 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | || | ||||| || ||| || | ||||||||||| || ||||| |||||||| Sbjct 75548 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCCGTCAATAGTTGGTTC 75605 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 | || ||||||| |||||||||| || | | | | |||| | | |||| || | Sbjct 75606 AGGGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 75663 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 9760 | |||||||| ||||||| || || ||||| || ||||| | | | ||| ||| Sbjct 75664 CAGCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA- 75722 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || || ||| || ||||||||||||||||| ||||| | || | ||| Sbjct 75723 AGATCGCGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA 75782 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 |||| || || || ||| | |||||| ||||| || || || || || || || Sbjct 75783 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTTTTCCC 75841 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 9918 ||||| || ||| | || || ||||| |||||| Sbjct 75842 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAAT 75880 >seq25841 Length=135519 Score = 127 bits (140), Expect = 2e-24 Identities = 201/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 |||||||||||| || ||||| ||||| |||||||| || || | ||||||||| | Sbjct 101642 AAAACCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCC--A 101699 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| || |||| | ||| ||||||| ||||||||||||||||| || || ||| Sbjct 101700 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATG 101759 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || ||||| || || || || | ||||| ||| || | || || || Sbjct 101760 CAAGG--CGCTTTCGACTTCGCCTTCTCGAACAAATCCC--TCACTCTAGAAGCTCCAAC 101815 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||||||||||| ||| ||||| | || | | |||| || || || ||| || ||| Sbjct 101816 ACCAACAAACAACTCAACAAACTCTGATGGTGCACATGAGAAAAATGGTACACCAGCTTC 101875 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| |||| |||| || | ||| ||||| || ||||| || Sbjct 101876 ACCAGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 101917 >seq42040 Length=32045 Score = 123 bits (136), Expect = 3e-23 Identities = 200/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || ||||| ||||| |||||||| || || | ||||||||| | Sbjct 5558 AAACCCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 5615 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| || |||| | ||| | ||||| ||||||||||||||||| || || ||| Sbjct 5616 CCTCCCATTCCTGCACCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATG 5675 Query 9731 CATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || ||||| || |||| || | ||||| ||| || | || || || Sbjct 5676 CAAGGCGC--TTTCGACTTCGCCTTCTCGAACAAATCCCT--CACTCTAGAAGCTCCAAC 5731 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||||||||||| ||| ||||| | || || | |||| || || || ||| || ||| Sbjct 5732 ACCAACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGTACACCAGCTTC 5791 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||| |||| |||| || | ||| ||||| || ||||| || Sbjct 5792 ACCAGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 5833 >seq3570 Length=110709 Score = 123 bits (136), Expect = 3e-23 Identities = 217/309 (70%), Gaps = 8/309 (3%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 ||||||||||| || ||||| |||||||| | || ||||||| |||||||||| || | Sbjct 53315 AAACCATCCATTTCCGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTCCCT--C 53258 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | |||| | | |||| || || |||||||| ||||||| || || |||| Sbjct 53257 CTCCAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGC 53198 Query 9732 ATGGTTGATTTT-CGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 | || ||||| | | | ||| ||| ||||| || || || ||| || |||||| Sbjct 53197 AGGGAGCATTTTCCTTGGCCTTCTTGAAA-AGATCACGGACTCGAGAGGCTCCTACACCA 53139 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 ||||||||||| ||||| | || | ||| |||| || || || ||| | |||||| Sbjct 53138 ACAAACATCTCAACAAATTCTGAACCTGAA-ATTGAGAAAAATGGAACACCCGCTTCACC 53080 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 ||||| || || || || ||||| || ||||| || ||| | || || |||| Sbjct 53079 AGCAATTGCCTTTGCTAGCAGGGTCTTCCCAGTACCAGGAGGACCAACAAGAAGAACACC 53020 Query 9910 TCGTGGAAT 9918 | |||||| Sbjct 53019 TTTTGGAAT 53011 >seq73353 Length=20824 Score = 113 bits (124), Expect = 5e-20 Identities = 253/377 (67%), Gaps = 16/377 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| |||||||| ||||| |||||||| || |||| |||||||| | Sbjct 9218 AAACCCATCCATTTCTGTCAACAGTTGATTAATAGTCTGCTCCCTCTCATCATTTCC--- 9274 Query 9673 CATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9726 ||| ||| || |||| |||| |||| || ||||||||||||||||| || || Sbjct 9275 ---ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACAC 9331 Query 9727 GATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCC 9784 || || || ||||| || || ||||| | ||||| ||| | || ||| Sbjct 9332 AATACAAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCC 9389 Query 9785 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 9844 ||||| ||||||| ||| ||||| | || || | |||| || || || ||| | Sbjct 9390 ACACCGACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCC 9449 Query 9845 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 9904 ||||| || | |||| || | ||| |||||||| || || || ||| | | || Sbjct 9450 TCACCAGCTACTGCTCTAGCCAAAAGTGTCTTACCAGTGCCAGGTGGTCCCACTAAAAGA 9509 Query 9905 GCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 9964 ||| ||| ||||| || || || ||| | ||||| | || | ||||| Sbjct 9510 CACCCTTTTGGTATCTTAGCACCTAAAGCAGTATATTTATCAGGATTTTTCAAGAAATCA 9569 Query 9965 ACAATTTCTTCCAATTC 9981 |||| ||||| ||| || Sbjct 9570 ACAACTTCTTGCAACTC 9586 >seq154018 Length=23313 Score = 105 bits (116), Expect = 8e-18 Identities = 195/283 (69%), Gaps = 16/283 (6%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| |||||||| || || |||||||| || || | |||||||| | Sbjct 12184 AACCCATCCATTTCTGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 12239 Query 9674 ATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 ||| ||| || |||| |||| |||| || ||||||||||||||||| || || Sbjct 12240 --ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACA 12297 Query 9728 ATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCA 9785 || || || ||||| || || ||||| | ||||| ||| | || |||| Sbjct 12298 ATACAAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCA 12355 Query 9786 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9845 |||| ||||||| ||| ||||| | || || | |||| || || || ||| | | Sbjct 12356 CACCCACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCT 12415 Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 |||| || | |||| || | ||| |||||||| ||||| || Sbjct 12416 CACCAGCTACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGG 12458 >seq138865 Length=42912 Score = 102 bits (112), Expect = 9e-17 Identities = 200/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| | || || ||||| | || | |||||| || ||| | ||| || || || Sbjct 26080 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTGGCAGC 26139 Query 9586 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 ||||||| | || |||||| | ||||||||||| || || | |||||||||| Sbjct 26140 AATGACAATGACTCCAGTGTTTCC--AGTGAAACCATCCATTTCAGTGAGAAGTTGGTTA 26197 Query 9644 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9701 | || || || | ||||||||| | | | | | ||||| | | |||| | || | Sbjct 26198 AGTGTCTGCTCTCTTTCATCATTTCCACCGCC--AATACCAGTTCCTCTTTGCCTCCCAA 26255 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGA 9761 | ||||||||||||||||| ||||| | || ||| |||||| || | || | Sbjct 26256 CAGCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTCCTTTGCCTTGTTGAATA 26315 Query 9762 GATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAA 9807 |||| || || || | || |||||||||||||||||||| ||||| Sbjct 26316 AGTCCC-TA-ACTCTAGAAGCTCCCACACCAACAAACATCTCAACAAA 26361 >seq58966 Length=79355 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/286 (69%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| | || || ||||| | || | |||||| || ||| | ||| || || || Sbjct 42408 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 42467 Query 9586 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 ||||||| | || |||||| | |||||||||||| || || | |||||||||| Sbjct 42468 AATGACAATGACTCCAGTGTTTCC--AGTAAAACCATCCATTTCAGTGAGAAGTTGGTTA 42525 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9703 | || || || | ||||||||| | | ||||| | | |||| | || || Sbjct 42526 AGTGTCTGCTCTCTTTCATCATTTCCACCACCAATACCAGTTCCTCTTTGCCTCCCAACA 42585 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 ||||||||||||||||| ||||| | || ||| ||||| || | || | Sbjct 42586 GCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTGCTTTGCCTTGTTGAATAAG 42645 Query 9764 TCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAA 9807 |||| || || || | || |||||||||||||||||||| || || Sbjct 42646 TCCC-TA-ACTCTAGAAGCTCCCACACCAACAAACATCTCAACGAA 42689 >seq65957 Length=165596 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 104196 ||||||| || | || ||| |||||| ||||||||||||||| | || || | || | Sbjct 148167 AGAGACTTTGATTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCTTACCTCTTAAAG 148108 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 || | ||| | | |||| ||||| ||||| | ||| | || | | || || Sbjct 148107 ATTC-AGGGTAAAGTTGTAGAAAGGCCACAACACATGCTGATGAGAGTATCTGTTGGGAT 148049 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 || ||| || ||||| |||||| | ||||||| | |||||| ||| | ||| Sbjct 148048 CCACAAGGATGATATTGAATCTGTCATCAAGACATATCATTTGATGTCTCAACGATGGTT 147989 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 || ||| ||| | ||||| | || |||||||| || |||||||| ||| Sbjct 147988 CACTCATGCATCTCCAACATTATTTAATGCTGGAACTCCAAGACCTCAA 147940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582034151502280