Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq134547 91.5 7e-14 seq54991 91.5 7e-14 >seq134547 Length=56674 Score = 91.5 bits (100), Expect = 7e-14 Identities = 155/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 || || ||||| ||||||||||| || | ||| | ||| || |||| | | | | Sbjct 29728 CGAGTGCCAAATTGACCATTTGGTTGCAAAAGATTTACATTATTACTGCCAACATAGTCC 29669 Query 65147 TGAGCCATTCCGATAAT--TGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAAT 65204 || ||||| || || || |||||| | | |||| |||||| || ||||| |||| | Sbjct 29668 TGTGCCATGCCAATGATGGTGCTGC--TAAGACTCTGTTCACCATGGTGATAAGCTGAGT 29611 Query 65205 GTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAA 65264 | ||||||||||| ||| |||||| | ||||||| |||| | || ||| | |||| Sbjct 29610 GCTCAGAGACATAACCAGAAAATTGGGAAACTTTTGCTTCCTTAACAAAGTTCCTCTTAA 29551 Query 65265 ATGCAGAATACAATATTTTCCGTAAACTAATTTTCAATCCATC 65307 | ||| | ||| || |||| | || |||||| ||||| Sbjct 29550 ACGCACAGAACAGAATCTTCCTTTGACCCGGTTTCAAACCATC 29508 >seq54991 Length=172216 Score = 91.5 bits (100), Expect = 7e-14 Identities = 155/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 || || ||||| ||||||||||| || | ||| | ||| || |||| | | | | Sbjct 13215 CGAGTGCCAAATTGACCATTTGGTTGCAAAAGATTTACATTATTGCTGCCAACATAGTCC 13274 Query 65147 TGAGCCATTCCGATAAT--TGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAAT 65204 || ||||| || || || |||||| | | |||| ||||| || ||||| |||| | Sbjct 13275 TGTGCCATGCCAATGATGGTGCTGC--TAAGACTCTGCTCACCATGGTGATAAGCTGAGT 13332 Query 65205 GTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAA 65264 | ||||||||||| ||| |||||| | ||||||| |||| | || ||| | |||| Sbjct 13333 GCTCAGAGACATAACCAGAAAATTGGGAAACTTTTGCTTCCTTAACAAAGTTCCTCTTAA 13392 Query 65265 ATGCAGAATACAATATTTTCCGTAAACTAATTTTCAATCCATC 65307 ||||| | ||| || |||| | || |||||| ||||| Sbjct 13393 ATGCACAGAACAGAATCTTCCTTTGACCCGGTTTCAAACCATC 13435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235196735729550