Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq156841 100 3e-16 seq119769 98.7 1e-15 >seq156841 Length=49269 Score = 100 bits (110), Expect = 3e-16 Identities = 282/428 (66%), Gaps = 4/428 (1%) Strand=Plus/Minus Query 59687 GCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAA 59746 ||||||||||| ||||| ||||| ||||| || || || || || | ||||| Sbjct 13350 GCATTTCATCACTCACGTCCTTGCCTTTTTCGCCGCCTCAGACGGCATCGTTTTAGAAAA 13291 Query 59747 TATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTA 59806 ||| | | || || || ||||| |||||||||| || | ||||||| | Sbjct 13290 CCTAGCCGGAAGGTTCATGAAAGAAGTCCAAGTTGCCGAGGCGCGTGCTTTCTACGGCTT 13231 Query 59807 TCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGG 59865 || ||| | || ||||||||||||| |||| || | | || || Sbjct 13230 CCAAATCGCG-ATTGAAAACATCCACTCCGAGATGTACAGTCTGCTTCTAGAGTCGTACA 13172 Query 59866 TCAAGGATCCGGAAGAGAAG-GCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTT 59924 ||||||| | || || || || | | | ||||| || | ||||| |||| ||| Sbjct 13171 TCAAGGACTCTGACGAAAAAAGCAGAT-TATTCCGCGCAGTTGAGACTATCCCCTGTGTT 13113 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCATTTGCACAACGT 59984 | | || || | |||||| | | ||||| | | | | ||||||| | ||| Sbjct 13112 GAGAAGAAGGCGAAGTGGGCCCTACGTTGGATCGATGGTTCCGAAACATTTGCGGAGCGT 13053 Query 59985 CTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTC 60044 | | || ||||| || |||||||| || || |||||||| ||||||||||| ||| Sbjct 13052 TTGGTTGCCTTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTCTGTGCTATATTC 12993 Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGG 60104 ||| | |||||||| || | ||||| || | | |||||| |||||| | ||||| || Sbjct 12992 TGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATTTCAAGG 12933 Query 60105 GACGAGGG 60112 ||||| || Sbjct 12932 GACGAAGG 12925 >seq119769 Length=87979 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGT 60030 ||||||| | ||| | | || ||||| || |||||||| || || |||||||| | Sbjct 78714 CATTTGCGGAGCGTTTGGTTGCATTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCT 78773 Query 60031 TCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090 |||||||||| |||||| | |||||||| || | ||||| || | | ||||| |||| Sbjct 78774 TCTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACCTTCTCGAACG 78833 Query 60091 AGCTGATTTCCCGGGACGAGGG 60112 || ||||||| ||||||| || Sbjct 78834 AGTTGATTTCAAGGGACGAAGG 78855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547371204349680