Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq78580 86.0 7e-12 seq74728 84.2 2e-11 seq97115 82.4 8e-11 seq52732 82.4 8e-11 >seq78580 Length=33144 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 16660 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 16719 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 16720 TGAGCTACGAGAGC 16733 >seq74728 Length=62415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/87 (83%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 79612 CTTAGGTCCAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGG 79671 ||||| ||| | |||| ||| |||| | || |||| ||||||||||||||||||||| Sbjct 49769 CTTAG--CCAAAATGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGG 49712 Query 79672 TGCTCT-ACCAATTGAGCTACGAAAGC 79697 |||||| ||||| |||||||||| ||| Sbjct 49711 TGCTCTAACCAACTGAGCTACGAGAGC 49685 >seq97115 Length=1327 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 601 CTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 542 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 541 CTGAGCTACGAGAGC 527 >seq52732 Length=109524 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 13401 CTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 13342 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 13341 CTGAGCTACGAGAGC 13327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546065156870600