Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_028834.1 Length=48216 Score E Sequences producing significant alignments: (Bits) Value seq168247 80.6 8e-11 seq134591 80.6 8e-11 seq24906 80.6 8e-11 seq23875 80.6 8e-11 >seq168247 Length=430597 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 325377 AGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 325436 Query 36341 C 36341 | Sbjct 325437 C 325437 >seq134591 Length=81537 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 51403 AGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 51344 Query 36341 C 36341 | Sbjct 51343 C 51343 >seq24906 Length=46463 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 32427 AGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 32368 Query 36341 C 36341 | Sbjct 32367 C 32367 >seq23875 Length=57864 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 21365 AGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 21306 Query 36341 C 36341 | Sbjct 21305 C 21305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153861579449292