Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq168246 82.4 2e-11 seq162548 82.4 2e-11 seq102426 82.4 2e-11 seq98499 82.4 2e-11 seq3055 82.4 2e-11 >seq168246 Length=155943 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 38432 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 38373 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 38372 CTGTCTCCGCAAC 38360 >seq162548 Length=158198 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 79941 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 79882 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 79881 CTGTCTCCGCAAC 79869 >seq102426 Length=2395 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 1279 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 1220 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 1219 CTGTCTCCGCAAC 1207 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 1597 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 1538 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 1537 CTGTCTCCGCAAC 1525 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 1963 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 1904 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 1903 CTGTCTCCGCAAC 1891 >seq98499 Length=46788 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 610 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 551 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 550 CTGTCTCCGCAAC 538 >seq3055 Length=68109 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 1064 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 1123 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 1124 CTGTCTCCGCAAC 1136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162200086318446