Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq140303 84.2 2e-11 seq115442 84.2 2e-11 >seq140303 Length=60193 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 ||||| | |||| ||||||||||| || || | ||||| || || |||| |||| Sbjct 56254 TGAGCTACCATGCATGTCAACAAAGCATATGATGCAATGTTAAATGGCACTCCCAAACCC 56313 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 || ||||| || | ||| |||| ||| || || | |||||| || |||||||||||||| Sbjct 56314 ATATCTGCAGAGCGCTGATACATTTGACAGGATAACTCCCCATTGGCAACATAAAACTG 56372 >seq115442 Length=49073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 ||||| | |||| ||||||||||| || || | ||||| || || |||| |||| Sbjct 12801 TGAGCTACCATGCATGTCAACAAAGCATATGATGCGATGTTAAATGGCACTCCCAAACCC 12860 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 || ||||| || | ||| |||| ||| || || | |||||| || |||||||||||||| Sbjct 12861 ATATCTGCAGAGCGCTGATACATTTGACAGGATAACTCCCCATTGGCAACATAAAACTG 12919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413626911047308