Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq86621 96.9 2e-15 seq130076 91.5 1e-13 seq27789 87.8 1e-12 seq23306 86.0 4e-12 seq102018 84.2 2e-11 seq64032 84.2 2e-11 seq162580 82.4 5e-11 seq99787 82.4 5e-11 seq53431 82.4 5e-11 >seq86621 Length=111109 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||||||||||| || ||| || | || || || || | Sbjct 91365 ATGCAGATCTTTGTAAAGACTCTTACTGGCAAGACTATAACTCTCGAAGTTGAGAGTTCA 91424 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| || ||| ||||| |||||||||||| |||| || | Sbjct 91425 GACACGATCGACAAT--GTTAAATCGAAAATCCAGGACAAAGAAGGTATTCCACCAGATC 91482 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 | ||||| || || ||||| ||||||||| | || || | ||| | |||| | |||||| Sbjct 91483 AACAACGTTTGATCTTTGCAGGAAAACAACTCGAGGATGGACGGACTCTTG-CGGATTAC 91541 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| ||| ||| | || | ||| | ||| | ||||| || Sbjct 91542 AACATTCAAAAGGAGTCAACTCTCCACCTTGTTCTTCGTCTACGTGGTGG 91591 >seq130076 Length=26012 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || || || || || |||| |||||| | Sbjct 3928 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTCGAATCC 3987 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||||| ||||||| || || ||| || ||||| ||||| |||| Sbjct 3988 TCCGAC-----ACAATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCAC 4042 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 ||| ||||| ||| | ||||| ||||||||||| |||| || | || | | | | | Sbjct 4043 CGGACCAGCAGCGGCTCATTTTCGCCGGAAAACAGCTGGAGGATGGCCGAACCCTAGCTG 4102 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || || |||| | |||||||| | ||| | ||||| || Sbjct 4103 ATTACAACATCCAGAAGGAATCCACTCTCCATTTGGTGCTCCGTCTCCGTGGTGG 4157 >seq27789 Length=27798 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || ||||| || |||||| |||| ||||| ||| | Sbjct 5503 ATGCAAATCTTTGTCAAAACCCTGACTGGAAAGACTATTACGCTTGAGGTCGAGAGCTCA 5444 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| ||| || ||||| || ||| |||| || | Sbjct 5443 GACACCATTGACAAT--GTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCTGATC 5386 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | ||| |||| |||||||| || || ||| | || || | | | |||| | |||||| Sbjct 5385 AACAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGGTAGAACTCTTG-CTGATTAC 5327 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| ||| | ||| | || | || | |||||||| Sbjct 5326 AACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTTCGCCTTCGTGGCGG 5277 >seq23306 Length=7682 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || || || || |||||| | || || || ||| | Sbjct 4725 ATGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTCGAGGTTGAGAGCTCG 4666 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | || | | ||||||||| | ||||| ||||| |||| || | Sbjct 4665 GACACCATTGATAAATGTTAAAACAAAAATTCAA-GACAAGGAAGGAATTCCTCCAGATC 4607 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 | ||| ||||||||||||| ||||||||| | || || | || | |||| | |||||| Sbjct 4606 AACAAAGGTTAATTTTTGCTGGAAAACAACTCGAGGATGGTCGAACACTTG-CTGATTAC 4548 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| || || |||| | ||| | || |||||| | || || || Sbjct 4547 AATATCCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 4498 >seq102018 Length=70691 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||| | |||||||| ||| || | || || || ||| | Sbjct 70359 ATGCAGATCTTTGTAAAAACTTTAACTGGGAAGACTATCACTCTCGAGGTTGAGAGCTCA 70418 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||| || ||||| ||||| |||| ||| | Sbjct 70419 GACACAATTGATAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATC 70476 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || ||||| ||||| ||| | || || | || | | | | || |||| Sbjct 70477 AGCAAAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACA 70536 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| ||| | || | ||| | ||||| ||||| || Sbjct 70537 ACATCCAAAAGGAGTCCACCCTCCACCTTGTTCTCCGTTTACGTGGTGG 70585 >seq64032 Length=36390 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||||||| | |||||||| || || |||| || || ||| || Sbjct 10541 ATGCAGATTTTTGTGAAAACTTTGACTGGGAAGACCATCACCCTTGAGGTTGAGAGCTCC 10482 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| ||||| ||| || ||||| ||||| | || || | Sbjct 10481 GACACCATTGACAAT--GTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCTCCAGATC 10424 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| |||| |||||||| || || || | || || | ||| | |||| | || ||| Sbjct 10423 AGCAGAGGTTGATTTTTGCTGGTAAGCAGCTCGAGGATGGACGAACTCTTG-CTGACTAC 10365 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| ||| | || | || | ||| ||||||| ||| Sbjct 10364 AACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTGCGTGGTGGC 10314 >seq162580 Length=72030 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || || |||||| || || |||| ||||||||| || Sbjct 31935 ATGCAAATCTTTGTTAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 31876 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | | |||| || | | | || | | || ||||| || || | || || Sbjct 31875 GACACTATCGACAA-CGTTAAGGCTAAGATTCAG--GACAAGGAGGGAATCCCACCAGAC 31819 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| |||| ||||| |||||||| ||| | || |||| | | | | | |||||| Sbjct 31818 CAGCAAAGGTTGATTTTCGCCGGAAAGCAACTCGAAGACGGCAGAACCCTAGCTGATTAC 31759 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || || | || ||||| | ||| | ||||| || Sbjct 31758 AACATCCAGAAGGAATCGACCCTTCACTTGGTCCTTCGTCTTCGTGGTGG 31709 >seq99787 Length=38434 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||||| || || || |||||| || | ||||| | | | Sbjct 19433 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATTACGCTTAAGGTCGAGAACTCA 19492 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| ||| || || ||||||||| |||| || | Sbjct 19493 GACACCATTGACAAT--GTCAAGGTAAAGATCCAGGATAAAGAAGGTATTCCTCCTGATC 19550 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | ||| |||| |||||||| || || ||| | || || || | | |||| | || ||| Sbjct 19551 AACAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGATAGAACTCTTG-CTGACTAC 19609 Query 27967 AACATCCAAAAAGAG 27981 |||||||| |||||| Sbjct 19610 AACATCCAGAAAGAG 19624 >seq53431 Length=29007 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/235 (68%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || || || || || |||| |||||| | Sbjct 13051 AAGATGCAGATCTTCGTGAAAACCCTGACGGGTAAGACCATCACCCTTGAGGTCGAATCC 13110 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||||| ||||||| || || ||| || ||||| ||||| | || Sbjct 13111 TCCGAC-----ACAATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATCCCAC 13165 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 ||| ||||| ||| | ||||| ||||||||||| | || || | || | | | | Sbjct 13166 CGGACCAGCAGCGGCTCATTTTCGCCGGAAAACAGCTCGAGGATGGTCGAACTCTAGCTG 13225 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || ||| |||| | |||||||| | ||| | ||||| || Sbjct 13226 ATTACAACATCCAGAAGGAGTCCACTCTCCATTTGGTGCTCCGTCTCCGTGGTGG 13280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355132700478969