Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq53431 98.7 9e-16 seq126260 96.9 3e-15 seq133954 89.7 4e-13 seq130076 86.0 5e-12 seq78068 86.0 5e-12 seq162921 82.4 7e-11 seq148856 82.4 7e-11 seq126074 82.4 7e-11 seq49006 82.4 7e-11 >seq53431 Length=29007 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||| || || || || ||||| || || ||||| | || || Sbjct 13263 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTTCGACCATCCTC 13204 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 |||||||| || || || || || |||||||||| ||||||| | || || |||||| Sbjct 13203 GAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGG-ATGCCTTCCTTGTCCT 13145 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| || || | ||| | | | || ||| || || || || | ||||| | Sbjct 13144 GGATCTT-TGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTC 13086 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || |||||||| ||||| || ||||| |||||||| Sbjct 13085 TTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 13051 >seq126260 Length=96127 Score = 96.9 bits (106), Expect = 3e-15 Identities = 168/243 (69%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||||| || || || ||||||| ||| || || ||| || ||||| Sbjct 61704 AAATATCTGCATACCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTAT 61763 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 |||||||| |||||||| | | | || ||||| || || || |||||||| | ||||| Sbjct 61764 GTTATAATCAGCAAGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTG 61823 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 |||||| | ||| | | || || || ||||| || | | | | || || Sbjct 61824 CTGGTCTGGGGGAATCCCTTCCTTATCTTGAATTTTGGCCTTCACGTTATCAATTGTGTC 61883 Query 39225 GCTCGA---CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTG 39281 ||| ||| || |||| |||||| ||||||| |||| || || || |||||||| Sbjct 61884 ---CGAACTCTCAACCTCCAAGGTGATAGTTTTTCCTGTCAAAGTCTTGACGAAGATTTG 61940 Query 39282 CAT 39284 ||| Sbjct 61941 CAT 61943 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||||||||| || || || || || ||||| ||||| Sbjct 61941 CATGCCTCCCCTCAGACGAAGCACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATC 62000 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| || | | | || ||||| ||||| || |||||||| | | ||||||||| | Sbjct 62001 TGCAAGGGTCCTTCCATCCTCAAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGG 62060 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTT--CTGTTTGAGCGTCGCCACCGTATC---GCTC 39228 || | | ||| |||||| ||| || | || | |||| | ||||| |||| Sbjct 62061 AGGAATACCCTCCTTGTCCTGGATCTTTGCCTTTACATTGTCG--ATGGTATCTGAGCTC 62118 Query 39229 GACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || | ||||| | || ||||| | ||||||||||| || ||||| Sbjct 62119 ---TCAACTTCAAGGGTGATCGTCTTGCCCGTTAAAGTTTTAACAAAAATCTGCAT 62171 >seq133954 Length=6269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || || || ||||||| ||| || || ||| || ||||| |||||||| ||| Sbjct 5583 CCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAGCA 5642 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||||| | | | || ||||| || || || |||||||| | ||||||||||| | ||| Sbjct 5643 AGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTGCTGGTCAGGGGG 5701 >seq130076 Length=26012 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| || || || || || ||||| || || ||||| | || || Sbjct 4140 CACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCCTC 4081 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || || || || || ||||||||||| | || | || || |||||| Sbjct 4080 CAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTG 4021 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || || | ||| | | | || ||| || || || || | ||||| | | Sbjct 4020 GATCTT-TGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCT 3962 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | ||||| || ||||| || ||||| |||||||| Sbjct 3961 TACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 3928 >seq78068 Length=5642 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || || || |||||| || || || ||| || ||||| ||||| || ||| Sbjct 2908 CCTCCCCTCAAACGCAACACCGGATAAAGTGTTGACTCCTTCTGTATGTTATAGTCAGCA 2849 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| | | | || ||||| || || || |||||||| | ||||||||||||| ||| Sbjct 2848 AGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAAACGCTGCTGGTCG--GGGA 2791 Query 39178 ACGCTCTCTTTGTC 39191 | ||| || ||||| Sbjct 2790 ATGCTTTCCTTGTC 2777 >seq162921 Length=13166 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||| || || || || |||||||| || ||||| |||| || Sbjct 9119 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTC 9178 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || |||||||||||||| | ||| | | || ||||| Sbjct 9179 GAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTG 9238 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || || | | | | || ||| || || || || | ||||| |||| Sbjct 9239 GATCTTGGCTTCCACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGTTTT 9298 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || ||||| || ||||| |||||||| Sbjct 9299 ACCCGTTAGGGTTTTGACGAAGATCTGCATCTT 9331 >seq148856 Length=461781 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||||||||| ||||| || || | || |||||||| || || ||||||| Sbjct 308331 CTTTTTGGATATTATAATCTGCAAGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAATA 308390 Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175 | ||||| ||||||| |||||| Sbjct 308391 TCAGACGTTGCTGGTCCGGTGG 308412 >seq126074 Length=2915 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||||||||| ||||| || || | || |||||||| || || ||||||| Sbjct 1738 CTTTTTGGATATTATAATCTGCAAGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAATA 1679 Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175 | ||||| ||||||| |||||| Sbjct 1678 TCAGACGTTGCTGGTCCGGTGG 1657 >seq49006 Length=121539 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||| || || || || |||||||| || ||||| |||| || Sbjct 73678 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTC 73737 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || || || || ||||||||||| || | ||| | | || || || Sbjct 73738 AAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTATCTTG 73797 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||| | | | | || ||| || || || || | ||||| |||| Sbjct 73798 GATCTTGGCTTTCACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGTTTT 73857 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || ||||| || ||||| |||||||| Sbjct 73858 ACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 73890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428664812317511