Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq80051 91.5 1e-13 seq48865 86.0 5e-12 seq126260 82.4 6e-11 >seq80051 Length=167733 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 7/214 (3%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--AT 101084 ||||| | || | ||| ||||| || |||||||||||||| || ||| || || || Sbjct 619 AACACAAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCAGC--AAGTGTTCGACCAT 562 Query 101085 CTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGT 101144 |||| | |||||| || ||| | || | ||||||||| ||| || | ||||| |||| Sbjct 561 CTTCAAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAGGAATTCCTTCCTTGT 502 Query 101145 CGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAG 101204 | ||||||| ||| |||| | | | || || ||| | |||| ||||| | Sbjct 501 CTTGAATTTTTGTTTTAACATTGTCAATAGTGTC---GGAGTTAACCTCGAGTGTAATGG 445 Query 101205 TTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | || || || | ||| |||| ||| |||||||| Sbjct 444 TCTTTCCAGTTAGTGTCTTAACAAAGATTTGCAT 411 >seq48865 Length=263615 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 || || |||| ||| | ||||||||||| || ||||||||||| |||| |||| | Sbjct 56285 CTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGCCAGAGTTCGACCA 56344 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 |||||||| ||||| || ||| | || ||||| || ||||| || | ||||||||| Sbjct 56345 TCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGTATCCCTTCTTTG 56404 Query 101144 TC 101145 || Sbjct 56405 TC 56406 >seq126260 Length=96127 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| || | |||||||| || |||||||||||||| || | || | ||| || Sbjct 61962 CACCAAATGAAGGGTTGATTCCTTCTGAATATTGTAATCTGCAAGGGTCCTTCCATCCTC 62021 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 | |||||| || ||| |||| | ||| || |||||| || | || || ||||| Sbjct 62022 AAGTTGTTTCCCAGCAAATATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTG 62081 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 || ||| || |||| | | | || |||| | | ||| | ||| || || || Sbjct 62082 GATCTTTGCCTTTACATTGTCGATGGTATCTGAGCTCTCAACTTCAAGGGTGATCGTCTT 62141 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||||| || ||||||| |||||| ||||| Sbjct 62142 GCCCGTTAAAGTTTTAACAAAAATCTGCAT 62171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408820786304973