Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq119769 237 1e-57 seq156841 210 2e-49 >seq119769 Length=87979 Score = 237 bits (262), Expect = 1e-57 Identities = 566/850 (67%), Gaps = 7/850 (1%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| || ||||||||||| || |||| ||| ||| ||||| |||||||| Sbjct 79152 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGCTCCATCCAATCAAAC 79093 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| || ||||| || ||| | | ||| | | ||||| ||||| || Sbjct 79092 GGATTCTGAGCATTGTATAACTTATCATAACCCAAAGCATCCAACAATCTATCAGCCACG 79033 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACA-GGTAGCGC 4450 ||||| || || | |||||| | || | || ||||| | | | |||| || ||||| Sbjct 79032 AATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG-CGCACAAGGCAGCGC 78974 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || || |||||| |||||| || || |||| | || | || | | || Sbjct 78973 GTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATTCCCTTAACTCGTTC 78914 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 | || | || | ||| | | | | | ||||| ||||||||||| |||||||| Sbjct 78913 CTCAGTAAGCTTCGTCCTTAACAAACTATAAAGCAAACAAGCAAAATCACAGTGCAAACC 78854 Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630 |||||| || ||||| ||||| || || |||||||| |||||||| || | |||||| Sbjct 78853 TTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTT 78794 Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690 | ||| |||||||| || ||||| || || || ||||| || ||||| || Sbjct 78793 TAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCTTCCACACAAGCAAATGC 78734 Query 4691 TACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGC 4750 || || || | | || | || ||| ||||| || |||||| || || Sbjct 78733 AACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCCAACGTAGTGCCCACTTCGC 78677 Query 4751 TTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGG 4810 || |||| ||| || || || || | | ||| |||||| | |||||||| | Sbjct 78676 CTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGA 78617 Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870 ||| | || |||| |||| || || || ||||| || ||||| || ||||| || || Sbjct 78616 GTCCTTGATGTAAGACTCTAGAAGCAGACTGTACATCTCGGAATGGATGTTTTCAATCGC 78557 Query 4871 AATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTT 4929 || || || ||||| |||||| | || || | ||||| ||||| || || ||| Sbjct 78556 GATTTGGAAGCCGTAGAAAGCA-CGCGCCTCCGCAACTTGGACTTCTTTCATGAACCTTC 78498 Query 4930 CTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATA 4989 | ||| |||||| || || ||||| ||| || ||||| || | ||||||| | Sbjct 78497 CGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGA 78438 Query 4990 TAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049 | || | | |||| | || | || ||| |||||| | |||| || |||||| | Sbjct 78437 TGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAGTGACGGGTATCTGAAGATAAATCGA 78378 Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGAT 5109 |||| ||| ||||||| || || ||| |||||||||||||| |||||| | || | Sbjct 78377 CTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGT 78318 Query 5110 ACTGAATCGG 5119 | ||||| || Sbjct 78317 ATTGAATTGG 78308 >seq156841 Length=49269 Score = 210 bits (232), Expect = 2e-49 Identities = 560/850 (66%), Gaps = 7/850 (1%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| || ||||||||||| || |||| ||| ||| ||||| |||||||| Sbjct 12628 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGCTCCATCCAATCAAAC 12687 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| || ||||| | || ||| | | ||| | | ||||| ||||| || Sbjct 12688 GGATTCTGCGCATTGTACAGCTTATCATAACCCAAAGCATCCAACAATCTATCAGCCACG 12747 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACA-GGTAGCGC 4450 ||||| || || | |||||| | || | || ||||| | | | |||| || ||||| Sbjct 12748 AATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG-CGCACAAGGCAGCGC 12806 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || || |||||| |||||| || || |||| | || | || | | || Sbjct 12807 GTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATTCCCTTAACTCGTTC 12866 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 | || | || | ||| | | | | | ||||| ||||||||||| |||||||| Sbjct 12867 CTCAGTAAGCTTCGTCCTTAACAAACTATAAAGCAAACAAGCAAAATCACAGTGCAAACC 12926 Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630 |||||| || ||| | ||||| || || |||||||| |||||||| || | |||||| Sbjct 12927 TTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGCATTAACCCCCGCTTTTT 12986 Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690 | ||| |||||||| || ||||| || || || ||||| || ||||| || Sbjct 12987 TAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCTTCCACACAAGCAAAGGC 13046 Query 4691 TACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGC 4750 || || || | | || | || || ||||| || ||||| || || Sbjct 13047 AACCAAACGCTCCGCAAATGTTTCGGAACCATCG---ATCCAACGTAGGGCCCACTTCGC 13103 Query 4751 TTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGG 4810 || |||| ||| || || || || | | ||| |||||| | |||||||| | Sbjct 13104 CTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGA 13163 Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870 ||| | || || | |||| || || || ||||| || || || || ||||| || || Sbjct 13164 GTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTGGATGTTTTCAATCGC 13223 Query 4871 AATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTT 4929 || || || ||||| |||||| | || || | ||||| ||||| || || ||| Sbjct 13224 GATTTGGAAGCCGTAGAAAGCA-CGCGCCTCGGCAACTTGGACTTCTTTCATGAACCTTC 13282 Query 4930 CTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATA 4989 | ||| |||||| || || ||||| ||| || ||||| || | || |||| | Sbjct 13283 CGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAAGGACGTGAGTGA 13342 Query 4990 TAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049 | || | | ||| | || | || ||| |||||| | ||| || |||||| | Sbjct 13343 TGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGGTATCGGAAGATAAATCGA 13402 Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGAT 5109 |||||||| ||||||| || || ||| |||||||||||||| |||||| | || | Sbjct 13403 CTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGT 13462 Query 5110 ACTGAATCGG 5119 | ||||| || Sbjct 13463 ATTGAATTGG 13472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426173930391251