Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq156824 102 1e-16 seq121296 100 4e-16 seq103224 95.1 2e-14 seq65957 91.5 2e-13 seq15852 91.5 2e-13 >seq156824 Length=33692 Score = 102 bits (112), Expect = 1e-16 Identities = 137/187 (73%), Gaps = 3/187 (2%) Strand=Plus/Minus Query 77882 AGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCA 77941 |||||||| | | |||||||||||| | ||||| | | ||||| || || ||||| Sbjct 25537 AGATTTGTTTTTAC-CTCTCTTTCATACTTTGTATACAACTTCTCAAAATCTTCACCCCA 25479 Query 77942 AACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT 78001 | ||| |||||||||| ||| |||| || | || ||||| | ||||| | | || Sbjct 25478 ACAATCTGCCAATCCAGGAGCCTCACTTGGACAAAATAAAGACCATTGACCAT-TGCTTT 25420 Query 78002 -AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTAT 78060 |||| || |||||| |||||||| | ||| |||||| || |||||||||| | || Sbjct 25419 GGACTCTTTCCATAAAAAGATCAGGCACCCAAAGAGCATAGAAAAGATCTCGGGCCCGAT 25360 Query 78061 GTTCTTC 78067 ||||||| Sbjct 25359 GTTCTTC 25353 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||| | || ||||| ||||| || |||||| ||| ||| | | || Sbjct 24695 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCAAATG 24636 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 || || | || || ||||| || || | ||| || ||||| || | || | ||||| Sbjct 24635 ATAAGTCTTGATGGCAGATTCGATATCATCCTTG-TGGATTCCAACAGAAACTCTCATCA 24577 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||||||| || |||||||| || || ||| || || || | ||| || |||| Sbjct 24576 ACATATGTTGTGGTCTTTCTACAACATTTCCATTAATCTTTAAGAGGTAAGACCGCTCCA 24517 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | ||||| |||||||| || | || |||||| || || || || || Sbjct 24516 AGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 24468 >seq121296 Length=44911 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||||||||| ||||||||||| || |||||| || ||| | | || Sbjct 5471 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 5412 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 || |||| || || ||||| || || | ||| || || || || | ||| | ||||| Sbjct 5411 ATACGTTTTGATGGCAGATTCAATATCATCCTTG-TGTATCCCAACAGATACTCTCATCA 5353 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| || || || ||||| || ||| | || || || | ||| || | || | Sbjct 5352 GCATGTGGTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 5293 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | ||||| ||||||||||| | || ||| ||||| || || || || Sbjct 5292 AGGTTTTGAAACCAAAATAATCATAGTCAAAATCTCTGTCATATATGAT 5244 >seq103224 Length=93449 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 77881 TAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCC 77940 ||||||||| | | |||||||||||| | | ||| ||| ||||| || || |||| Sbjct 77523 TAGATTTGTTTTTAC-CTCTCTTTCATACTTTGAATACAGCTTCTCAAAATCTTCACCCC 77465 Query 77941 AAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCT 78000 || ||| |||||||||| ||| |||| || | || ||||| | || | | | | Sbjct 77464 AACAATCTGCCAATCCAGGAGCCTCACTTGGACAAAATAAAGACCATTGCCCGT-TGCTT 77406 Query 78001 T-AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTA 78059 | |||| || |||||| |||||||| | ||| |||||| || |||||||||| | | Sbjct 77405 TGGACTCTTTCCATAAAAAGATCAGGCACCCAAAGAGCATAGAAAAGATCTCGGGCCCGA 77346 Query 78060 TGTTCTTC 78067 |||||||| Sbjct 77345 TGTTCTTC 77338 >seq65957 Length=165596 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||||||||| ||||||||||| || |||||| || ||| | | || Sbjct 147952 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 148011 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||||| | || | ||||| || || | ||| || || || || | ||| | ||||| Sbjct 148012 ATATGTCTTGATGACAGATTCAATATCATCCTTG-TGGATCCCAACAGATACTCTCATCA 148070 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| || || || ||||| || ||| | || || || | ||| || | || | Sbjct 148071 GCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 148130 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | || ||||||||| || || || || Sbjct 148131 GGGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCATATATGAT 148179 >seq15852 Length=16152 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||||||||| ||||||||||| || |||||| || ||| | | || Sbjct 4243 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 4184 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||||||| || || ||||| || || | ||| || || || || | ||| | ||||| Sbjct 4183 ATATGTTTTGATGGCAGATTCAATATCATCCTTG-TGTATCCCAACAGATACTCTCATCA 4125 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| || || || ||||| || ||| || || || | ||| || | || | Sbjct 4124 GCATGTGTTGTGGCCTTTCTACAACTTTACCCCGAATCTTTAAGAGGTAAGACCTCTCAA 4065 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | || ||| ||||| || || || || Sbjct 4064 GGGTTTTGAAACCAAAGTAATCATAGTCAAAATCTCTGTCATATATGAT 4016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693207850730080