Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq119769 132 5e-26 seq156841 123 3e-23 >seq119769 Length=87979 Score = 132 bits (146), Expect = 5e-26 Identities = 364/557 (65%), Gaps = 3/557 (1%) Strand=Plus/Minus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 ||||| ||||||||||| || | ||||| ||||| |||||| || || || || ||| Sbjct 78879 AAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTT 78820 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAG 23625 ||||| |||||||| || || ||||| | ||| ||||| ||| || ||| || || Sbjct 78819 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAA 78760 Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685 |||||||| || ||| ||||| || || | ||| |||||||| | || | Sbjct 78759 AAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTT---TCGGAACCG 78703 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745 ||||| | || ||| || |||||| | ||||| || || |||| ||| Sbjct 78702 TCGATCCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCG 78643 Query 23746 TTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATAC 23805 || | ||||||| ||| || | || || | || | || | ||| ||| Sbjct 78642 CGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGTAC 78583 Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865 || || ||||| || |||||||| || || || || || || ||| | || || | Sbjct 78582 ATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCCGCA 78523 Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 | ||| || || || | || ||| |||| ||||| ||| || || || || Sbjct 78522 ACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCG 78463 Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAA 23985 || || || ||||| |||| | || ||||| ||||| | | | || ||| ||| Sbjct 78462 GCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAG 78403 Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGC 24045 | | ||||| |||||||| ||||| ||| | ||||| ||| || ||||| Sbjct 78402 TGACGGGTATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTT 78343 Query 24046 TTATACATTAGCCAAAT 24062 || |||||| |||||| Sbjct 78342 TTGTACATTTCCCAAAT 78326 >seq156841 Length=49269 Score = 123 bits (136), Expect = 3e-23 Identities = 362/557 (65%), Gaps = 3/557 (1%) Strand=Plus/Plus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 ||||| ||||||||||| || | ||||| ||||| ||| || || || || || ||| Sbjct 12901 AAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTT 12960 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAG 23625 ||||| |||||||| || || ||||| | ||| ||||| ||| || ||| || || Sbjct 12961 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAA 13020 Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685 |||||||| || ||| |||||||| || | ||| |||||||| | || || Sbjct 13021 AAAATACCTTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTT---TCGGAACCA 13077 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745 ||||| | | ||| || |||||| | ||||| || || |||| ||| Sbjct 13078 TCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCG 13137 Query 23746 TTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATAC 23805 || | ||||||| ||| || | || || | || | || | ||| ||| Sbjct 13138 CGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTAC 13197 Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865 || || || || || |||||||| || || || || || || ||| | || || | Sbjct 13198 ATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCA 13257 Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 | ||| || || || | || ||| |||| ||||| ||| || || || || Sbjct 13258 ACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCG 13317 Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAA 23985 || || || ||||| || | | || ||||| |||||| | | | || ||| ||| Sbjct 13318 GCGAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAG 13377 Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGC 24045 | | |||| |||||||| ||||| ||| | ||||| ||| || ||||| Sbjct 13378 TGACGGGTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTT 13437 Query 24046 TTATACATTAGCCAAAT 24062 || |||||| |||||| Sbjct 13438 TTGTACATTTCCCAAAT 13454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520391265105800