Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq71085 105 1e-17 seq66586 102 2e-16 seq97627 100 6e-16 seq86262 100 6e-16 seq77685 100 6e-16 seq75624 100 6e-16 seq109550 98.7 2e-15 seq103181 98.7 2e-15 seq101736 98.7 2e-15 seq94866 98.7 2e-15 seq94727 98.7 2e-15 seq93962 98.7 2e-15 seq90928 98.7 2e-15 seq87705 98.7 2e-15 seq79601 98.7 2e-15 seq69693 98.7 2e-15 seq32078 98.7 2e-15 seq95772 95.1 3e-14 seq80836 95.1 3e-14 seq88462 91.5 3e-13 seq83771 91.5 3e-13 seq75959 89.7 1e-12 seq68326 89.7 1e-12 seq68032 84.2 5e-11 >seq71085 Length=49064 Score = 105 bits (116), Expect = 1e-17 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 165699 TTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCG 165758 ||| ||| || |||||||||||||||| |||||||||| || || |||| || ||||||| Sbjct 39988 TTAGAACACTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCG 40047 Query 165759 TGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||| ||||| Sbjct 40048 TGGGTTCGAGCCCCACGGTGGGC 40070 >seq66586 Length=18797 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 13353 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 13412 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 13413 GCCCCACGGTGGGC 13426 >seq97627 Length=84200 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 4903 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4844 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 4843 CCCCACGGTGGGC 4831 >seq86262 Length=126891 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 10164 CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 10105 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 10104 AGCCCCACGGTGGGC 10090 >seq77685 Length=84787 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 23832 CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 23773 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 23772 AGCCCCACGGTGGGC 23758 >seq75624 Length=21670 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 5376 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5317 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 5316 CCCCACGGTGGGC 5304 >seq109550 Length=100440 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 83387 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 83328 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 83327 CCCACGGTGGGC 83316 >seq103181 Length=40869 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 36462 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 36521 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 36522 CCCACGGTGGGC 36533 >seq101736 Length=95282 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| ||||| |||| || ||||||||||||| |||| Sbjct 63505 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAACCTTGTGGTCGTGGGTTTGAGC 63564 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 63565 CCCACGGTGGGC 63576 >seq94866 Length=34028 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 24873 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 24814 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 24813 CCCACGGTGGGC 24802 >seq94727 Length=39732 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4842 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4783 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4782 CCCACGGTGGGC 4771 >seq93962 Length=32862 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 30346 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 30287 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 30286 CCCACGGTGGGC 30275 >seq90928 Length=127683 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4342 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4401 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4402 CCCACGGTGGGC 4413 >seq87705 Length=65416 Score = 98.7 bits (108), Expect = 2e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||| ||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 51069 TTGCCCGTCTAGTTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 51128 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 51129 GCCCCACGGTGGGC 51142 >seq79601 Length=89936 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2768 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2709 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2708 CCCACGGTGGGC 2697 >seq69693 Length=81528 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6424 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6365 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6364 CCCACGGTGGGC 6353 >seq32078 Length=88332 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 13409 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13468 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13469 CCCACGGTGGGC 13480 >seq95772 Length=45116 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| | || |||| || |||||||||||||||||| Sbjct 35356 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAAGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 35297 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 35296 CCCACGGTGGGC 35285 >seq80836 Length=79865 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 69682 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 69623 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 69622 CCCACGGTGGGC 69611 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 70700 GCCCGTCTAGCTCAGCTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 70641 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 70640 CCCACGGTGGGC 70629 >seq88462 Length=77575 Score = 91.5 bits (100), Expect = 3e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGG-TTCG 165766 |||||||||||||||||| ||||||||| || || |||| || ||||||||||| |||| Sbjct 65301 TTGCCCGTCTAGCTCAGTTTGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTCG 65242 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 65241 AGCCCCACGGTGGGC 65227 >seq83771 Length=57610 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771 |||||||||||||| |||||||||| | || |||| || |||||||||||||||||||| Sbjct 15475 CCGTCTAGCTCAGTTGGTAGAGCGCAAAGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCC 15534 Query 165772 CACGATGGGC 165781 |||| ||||| Sbjct 15535 CACGGTGGGC 15544 >seq75959 Length=145061 Score = 89.7 bits (98), Expect = 1e-12 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 230390 TTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA 230449 || |||| || || || | |||| |||||| | |||||||| | || ||| || Sbjct 63280 TTGCAGATGCTGTGGAGATAGAAAGGGAGTTTGTGTGTGACGCGCTGCCTTGTGCGCTGG 63221 Query 230450 TTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTG 230509 | || ||||| | || | ||| | | ||||| |||||||| || || | | || | Sbjct 63220 TGGGAATGAATGGAGATTTGATGAGCAAATACATTGAATTCGTGGCTGATAGATTGTTGG 63161 Query 230510 TTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCA 230569 ||| | ||||| || || ||||||| || |||| || |||| | |||||||| | Sbjct 63160 ATGCTTTGGGTTATGATAAGTTGTACAATGCTCAGAATCCGTTTGATTGGATGGAGCTGA 63101 Query 230570 TTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 || | ||||||||||| || ||||| || ||| | || | || ||||||| Sbjct 63100 TTAGTTTACAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAGA 63047 >seq68326 Length=86029 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||| ||| |||||||||| || || ||||| | ||||||| |||||||||| Sbjct 39937 GCCCGTCTAGCTTAGTTGGTAGAGCGCAAGGCTCTTAATATTGTGGTCGAGGGTTCGAGC 39878 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 39877 CCCACGGTGGGC 39866 >seq68032 Length=158421 Score = 84.2 bits (92), Expect = 5e-11 Identities = 224/339 (66%), Gaps = 14/339 (4%) Strand=Plus/Minus Query 61130 TCCTCAAACAGAAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATA 61189 ||| ||| | ||| ||||||||| ||||| | ||| || | ||| ||||| | Sbjct 90387 TCCGCAATCCGAATCCACTCCGTTTCATCCTAGATCCCCTTACGCCGTTTCAAAA---TG 90331 Query 61190 CGCTTACTGGATTTGTAAA-----AATTACCGCGAGTCGTATGGAATGTTTGTATGTAAC 61244 |||| | ||| ||| | ||||| ||||| |||| || || || | || ||| Sbjct 90330 CGCTGC--GCATTGGTACACAGTGAATTATCGCGAAGCGTACGGGATATTCGCGTGCAAC 90273 Query 61245 TCGATTTGTTTCAATCACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATT 61304 ||||| |||||||||||| || | ||||| | | || || || | ||||| Sbjct 90272 GGGATTTTATTCAATCACGAGTCGCCACGTCGAGGTGAGAATTTCGTAACAAGGAAAATC 90213 Query 61305 ACGAAGGCGGTTGCAAATATTTTTAACGGTGTCGAAA--AATGCATGTATCTAGGAAACA 61362 ||| ||| || | | ||| | |||| | ||| || | ||| | ||||||| Sbjct 90212 ACGCGGGCTGTAGGGAGAATTAAAATCGGTTTGCAAAGCAAGG--TGTTTTTAGGAAATT 90155 Query 61363 TAGACTCTAAAAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGT 61422 || | | || || ||||| | ||| | ||| || | || || |||||| ||||| Sbjct 90154 TACAAGCGTCGAGGGACTGGGGTTTTGCTGGAGACTACGTAGAAGCAATGTGGATGATGC 90095 Query 61423 TGCAACAAGATACTCCAGATGACTACGTTATTGCGACTG 61461 |||| ||||| | |||||||| |||||| | ||||||| Sbjct 90094 TGCAGCAAGAGAAGCCAGATGATTACGTTGTGGCGACTG 90056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1055661586923240