Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq75959 105 7e-18 >seq75959 Length=145061 Score = 105 bits (116), Expect = 7e-18 Identities = 481/750 (64%), Gaps = 11/750 (1%) Strand=Plus/Plus Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 |||||||| || || ||||| || |||| || ||| || || | |||||||| | || Sbjct 63166 AATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG- 63224 Query 16853 CGTACC-GGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 || || || || || || || ||| || | ||||| | || || || || || Sbjct 63225 CGCACAAGGCAGCGCGTCACACACAAACTCCCTT-TCTATCTCCACAGCATCTGCAACAA 63283 Query 16911 TACTAGCAACTCGTTCCTCGG-ACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCG 16969 | | |||||||||||| | | | | | |||| | | || | || ||| || Sbjct 63284 TTCCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAA-AGCAAACAAGCA 63342 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 ||||| || || || || ||||| || || | ||||| || || || || || ||| Sbjct 63343 AAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCAGGC 63402 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 || || || || |||||||| ||||| || ||| ||||| || || ||||| Sbjct 63403 ATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCT 63462 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149 || || | ||||| || | || || || || | || || || ||| |||| Sbjct 63463 TCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGT--CGA-TCCAA 63519 Query 17150 TTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAAT 17209 | |||||| || || | || | || || || || | || |||||| Sbjct 63520 CGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAAT 63579 Query 17210 TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269 | |||||| | ||| | || || | || | || || |||||||| ||||| Sbjct 63580 CTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGTACATCTCGGAA 63639 Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTGAAC 17328 || ||||| || || || || || || ||||| |||||| || || ||||| | ||| || Sbjct 63640 TGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA-CGCGCCTCCGCAACTTGGAC 63698 Query 17329 TTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388 ||| ||| | | | ||||| ||||| ||||||||||| ||||||||||| Sbjct 63699 TTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAA 63758 Query 17389 CGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAA 17448 || | | ||| | ||||||| ||||| | || || || ||||| Sbjct 63759 GGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAGTGACGGGT 63818 Query 17449 ATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACAT 17508 |||| |||| ||| ||||| || | ||||| ||| || | || ||||| ||||| Sbjct 63819 ATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACAT 63878 Query 17509 ATTCCAAATATCATTGTATTGTATGGGGAA 17538 | |||||| | |||||| || ||||| Sbjct 63879 TTCCCAAATTTGTGGGTATTGAATTGGGAA 63908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516513432932640