Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq151228 87.8 1e-12 seq68163 82.4 6e-11 >seq151228 Length=243336 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 ||| |||||||| | |||||| || || | || ||| || ||||||||||||||||| Sbjct 172680 AGTAACATGAGCTACCATGCATGTCAACAAAGCATATGATGCGATGTTAAATGGCACTCC 172739 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 || |||||||| || || | ||||||| ||||||||| | || |||| ||||| Sbjct 172740 CAAACCCATATCTGCAGAGCGCTGATACATTTGACAGGATAACTCCCCATTGGCAACATA 172799 Query 101872 AAATTG 101877 ||| || Sbjct 172800 AAACTG 172805 >seq68163 Length=100544 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 |||||||| |||||||| || | | | ||| |||||||||||||||||||| | Sbjct 39748 ACATGAGCTATCATGCATGTCAGCAACGCATAAGATGCAATGTTAAATGGCACTCCCAGA 39689 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 ||||||||||| |||| ||||||| |||||||| Sbjct 39688 CCCATATCAGCAGATCGCTGATACATCTGACAGGA 39654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360548750202548