Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05-
16] 159,548 sequences; 1,688,466,321 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq75959 163 3e-35
>seq75959
Length=145061
Score = 163 bits (180), Expect = 3e-35
Identities = 389/584 (67%), Gaps = 8/584 (1%)
Strand=Plus/Plus
Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190
|||||| || ||||| ||||| | ||| ||||| || ||| || ||||| || || ||
Sbjct 63333 CAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGT 63392
Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 24249
| ||| ||||||| || |||||||| | ||| ||||| | | || | | | ||||| |
Sbjct 63393 TAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGA 63451
Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGT 24306
| ||||| ||||| || ||||| |||| | | || || | ||| | ||
Sbjct 63452 AAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGT 63511
Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366
| ||||| | | ||||| | |||||||| | ||||| || || ||||| | |
Sbjct 63512 CG---ATCCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTG 63568
Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426
| || | | ||||||| | | || || | || | || | | ||||| |
Sbjct 63569 CGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGT 63628
Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486
|||| || ||||| ||||||||||| || ||||| || ||||||||| | ||||| |
Sbjct 63629 ACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCCG 63688
Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546
|| || |||||| | || | | | |||| ||||| || || ||||| ||
Sbjct 63689 CAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGG 63748
Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 24606
| || ||||| || | ||||| | || |||| ||||| | || ||||| | | ||
Sbjct 63749 CGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCC 63808
Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666
| | | | ||||| ||||| ||| ||||| || | ||||| || || || || |
Sbjct 63809 AGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTT 63868
Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710
|||| ||||| | ||| || | | ||||||||||| || |||
Sbjct 63869 TTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 63912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592537511327040
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |